Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LINC01747-201ENST00000437696 1067 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 ARAFP2-201ENST00000440565 559 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AL357520.1-201ENST00000441557 453 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 HMGN1P32-201ENST00000441744 256 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 EFCAB14P1-201ENST00000442409 463 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 BMI1P1-201ENST00000445879 941 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 SUMO2P2-201ENST00000456482 255 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AL590326.1-201ENST00000460857 334 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC234782.3-201ENST00000461229 433 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC096741.1-201ENST00000472250 846 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC048346.1-201ENST00000510247 144 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC006499.4-201ENST00000510947 694 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC090568.2-203ENST00000521433 579 ntTSL 4 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC090692.1-201ENST00000531569 541 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC022796.1-202ENST00000531882 477 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 RASSF8-AS1-204ENST00000535436 1121 ntTSL 4 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AP003174.3-201ENST00000537926 516 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC055736.1-201ENST00000548135 629 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 FDPSP3-201ENST00000556903 1013 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AL121834.1-201ENST00000572284 509 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC091180.5-201ENST00000576461 382 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC018521.6-201ENST00000584276 335 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC091132.5-205ENST00000585761 560 ntTSL 4 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC010487.1-201ENST00000594408 1172 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 RPL23AP90-201ENST00000603820 236 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC006547.1-211ENST00000609191 828 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC008498.1-201ENST00000613012 531 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AP000851.2-201ENST00000629499 721 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 SPTAN1-222ENST00000630804 7812 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 DDX24-201ENST00000330836 2738 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AMPD3-204ENST00000444303 3994 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 MON2-202ENST00000393630 13275 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 SERPINB13-201ENST00000269489 3206 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 PLEKHS1-202ENST00000361048 3249 ntAPPRIS P3 TSL 2 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 PLEKHS1-207ENST00000619563 3247 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 MFSD8-227ENST00000641393 4069 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 OR9Q1-201ENST00000335397 2488 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 CREM-212ENST00000374728 1933 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 PYHIN1-204ENST00000392252 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 LINC00954-202ENST00000449086 2995 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC011447.7-201ENST00000624228 1590 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 NCALD-203ENST00000395923 3808 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 EFHC1-233ENST00000637353 3829 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 SERPINB4-201ENST00000341074 1749 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 RASGRP3-202ENST00000403687 4807 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC022784.6-204ENST00000520390 3442 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 CRBN-203ENST00000432408 2203 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 NDE1-202ENST00000396355 3936 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 LYARP1-201ENST00000436977 1501 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 LTBP1-202ENST00000404525 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 CACNB4-239ENST00000636947 5575 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 ITPK1-AS1-201ENST00000553639 4701 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 MEIS1-202ENST00000398506 3530 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 MR1-208ENST00000614012 7860 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC138627.1-203ENST00000641872 1680 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 THSD4-AS1-202ENST00000562634 2182 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 C3orf30-201ENST00000295622 1814 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 LINC02128-205ENST00000641755 1334 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 MAPK10-313ENST00000641405 2469 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 FGL1-203ENST00000398054 1462 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 PLS3-202ENST00000355899 3280 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 PALM2-AKAP2-201ENST00000302798 4718 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC006213.6-201ENST00000623722 4179 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 OR4D6-201ENST00000300127 1054 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 OR10A3-201ENST00000360759 1061 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 RNU6-839P-201ENST00000363347 108 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 RNU6-1066P-201ENST00000363573 105 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 RNU6-660P-201ENST00000364566 109 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 TIMD4-203ENST00000407087 1145 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AL133264.1-201ENST00000407157 562 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 CTSLP8-201ENST00000413075 967 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 YWHAZP3-201ENST00000415292 738 ntBASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 ENTPD3-AS1-201ENST00000420850 791 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 WWC3-AS1-201ENST00000430057 578 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC140Q96MF4 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms