Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC091940.1-204ENST00000507318 3091 ntTSL 2 BASIC7.49□□□□□ -1.21
MSX1P28360 AL031676.1-201ENST00000412519 1586 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 INPP5B-205ENST00000373027 3905 ntTSL 2 BASIC7.49□□□□□ -1.21
MSX1P28360 HSPD1P5-201ENST00000511127 1720 ntBASIC7.49□□□□□ -1.21
MSX1P28360 MRPS17P1-201ENST00000596009 3130 ntBASIC7.49□□□□□ -1.21
MSX1P28360 UIMC1-211ENST00000510698 1334 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 NXF2B-202ENST00000602195 2322 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 NXF2-202ENST00000625106 2337 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 PSG5-201ENST00000342951 1626 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 RIPOR2-206ENST00000538035 5389 ntTSL 2 BASIC7.48□□□□□ -1.21
MSX1P28360 ZNF225-206ENST00000592780 2538 ntTSL 5 BASIC7.48□□□□□ -1.21
MSX1P28360 INPP4B-212ENST00000507861 1506 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
MSX1P28360 METTL8-201ENST00000375258 8203 ntTSL 5 BASIC7.48□□□□□ -1.21
MSX1P28360 KCNMA1-212ENST00000406533 5639 ntAPPRIS ALT2 TSL 5 BASIC7.48□□□□□ -1.21
MSX1P28360 EBF1-203ENST00000517373 2277 ntTSL 5 BASIC7.48□□□□□ -1.21
MSX1P28360 RECQL-203ENST00000421138 2572 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
MSX1P28360 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC7.48□□□□□ -1.21
MSX1P28360 RAB5B-210ENST00000553116 3322 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
MSX1P28360 GNA12-203ENST00000407904 3918 ntTSL 2 BASIC7.48□□□□□ -1.21
MSX1P28360 NOLC1-209ENST00000605788 3932 ntAPPRIS P3 TSL 1 (best) BASIC7.48□□□□□ -1.21
MSX1P28360 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC7.48□□□□□ -1.21
MSX1P28360 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
MSX1P28360 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
MSX1P28360 Y_RNA.356-201ENST00000365475 113 ntBASIC7.48□□□□□ -1.21
MSX1P28360 BEND6-201ENST00000370745 579 ntTSL 5 BASIC7.48□□□□□ -1.21
MSX1P28360 ESD-201ENST00000378697 1079 ntTSL 5 BASIC7.48□□□□□ -1.21
MSX1P28360 RNA5SP256-201ENST00000390978 113 ntBASIC7.48□□□□□ -1.21
MSX1P28360 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC7.48□□□□□ -1.21
MSX1P28360 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC7.48□□□□□ -1.21
MSX1P28360 BRWD1-AS1-201ENST00000423274 691 ntTSL 4 BASIC7.48□□□□□ -1.21
MSX1P28360 AL355483.4-201ENST00000432653 470 ntTSL 3 BASIC7.48□□□□□ -1.21
MSX1P28360 AC242426.1-201ENST00000435270 960 ntBASIC7.48□□□□□ -1.21
MSX1P28360 PIP5K1P2-201ENST00000437005 1120 ntBASIC7.48□□□□□ -1.21
MSX1P28360 TTC28-AS1-216ENST00000437713 854 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
MSX1P28360 AL121885.2-201ENST00000440255 819 ntTSL 3 BASIC7.48□□□□□ -1.21
MSX1P28360 LYSMD1-202ENST00000440902 1003 ntTSL 2 BASIC7.48□□□□□ -1.21
MSX1P28360 OR7E125P-201ENST00000443450 846 ntBASIC7.48□□□□□ -1.21
MSX1P28360 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC7.48□□□□□ -1.21
MSX1P28360 AC010240.2-201ENST00000445363 1205 ntBASIC7.48□□□□□ -1.21
MSX1P28360 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC7.48□□□□□ -1.21
MSX1P28360 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC7.48□□□□□ -1.21
MSX1P28360 LINC00489-201ENST00000457816 543 ntTSL 5 BASIC7.48□□□□□ -1.21
MSX1P28360 MRPS33-203ENST00000467334 622 ntTSL 2 BASIC7.48□□□□□ -1.21
MSX1P28360 AC004801.2-201ENST00000468202 779 ntBASIC7.48□□□□□ -1.21
MSX1P28360 PHYKPL-205ENST00000476170 824 ntTSL 4 BASIC7.48□□□□□ -1.21
MSX1P28360 RN7SL403P-201ENST00000481783 305 ntBASIC7.48□□□□□ -1.21
MSX1P28360 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC7.48□□□□□ -1.21
MSX1P28360 AC114786.4-201ENST00000508771 728 ntBASIC7.48□□□□□ -1.21
MSX1P28360 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
MSX1P28360 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC7.48□□□□□ -1.21
MSX1P28360 LRRC34P2-201ENST00000514850 553 ntBASIC7.48□□□□□ -1.21
MSX1P28360 IGHVIII-67-3-201ENST00000517650 232 ntBASIC7.48□□□□□ -1.21
MSX1P28360 NPIPB14P-203ENST00000532298 987 ntBASIC7.48□□□□□ -1.21
MSX1P28360 LRTOMT-212ENST00000536917 579 ntTSL 3 BASIC7.48□□□□□ -1.21
MSX1P28360 YWHABP2-201ENST00000540201 713 ntBASIC7.48□□□□□ -1.21
MSX1P28360 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC7.48□□□□□ -1.21
MSX1P28360 LINC01588-211ENST00000556434 892 ntTSL 5 BASIC7.48□□□□□ -1.21
MSX1P28360 C16orf45-203ENST00000561692 534 ntTSL 3 BASIC7.48□□□□□ -1.21
MSX1P28360 ATP5F1P7-201ENST00000567330 760 ntBASIC7.48□□□□□ -1.21
MSX1P28360 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC7.48□□□□□ -1.21
MSX1P28360 SOCS6-203ENST00000582322 2625 ntAPPRIS P1 TSL 3 BASIC7.48□□□□□ -1.21
MSX1P28360 AC060780.3-201ENST00000589464 80 ntBASIC7.48□□□□□ -1.21
MSX1P28360 AP001269.1-201ENST00000592820 528 ntTSL 4 BASIC7.48□□□□□ -1.21
MSX1P28360 AC006547.1-208ENST00000598339 805 ntTSL 5 BASIC7.48□□□□□ -1.21
MSX1P28360 PLEKHA3P1-201ENST00000598554 894 ntBASIC7.48□□□□□ -1.21
MSX1P28360 VDAC1P5-201ENST00000603132 844 ntBASIC7.48□□□□□ -1.21
MSX1P28360 STXBP5-AS1-209ENST00000606831 2025 ntTSL 5 BASIC7.48□□□□□ -1.21
MSX1P28360 AL020991.1-201ENST00000612314 373 ntBASIC7.48□□□□□ -1.21
MSX1P28360 AL442067.2-201ENST00000614033 363 ntBASIC7.48□□□□□ -1.21
MSX1P28360 AC009233.1-201ENST00000616477 371 ntBASIC7.48□□□□□ -1.21
MSX1P28360 AC243830.3-201ENST00000616810 376 ntBASIC7.48□□□□□ -1.21
MSX1P28360 Metazoa_SRP.20-201ENST00000619896 275 ntBASIC7.48□□□□□ -1.21
MSX1P28360 AC002550.2-201ENST00000621246 394 ntBASIC7.48□□□□□ -1.21
MSX1P28360 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
MSX1P28360 AL589666.2-201ENST00000624603 618 ntBASIC7.48□□□□□ -1.21
MSX1P28360 LINC00598-212ENST00000637124 905 ntTSL 5 BASIC7.48□□□□□ -1.21
MSX1P28360 AC112487.2-201ENST00000637950 304 ntBASIC7.48□□□□□ -1.21
MSX1P28360 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC7.48□□□□□ -1.21
MSX1P28360 UBAP2L-203ENST00000361546 3864 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
MSX1P28360 FBXO40-201ENST00000338040 5929 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
MSX1P28360 NLGN4X-201ENST00000275857 5454 ntAPPRIS P2 TSL 1 (best) BASIC7.48□□□□□ -1.21
MSX1P28360 OSER1-202ENST00000372970 1616 ntAPPRIS P1 TSL 3 BASIC7.48□□□□□ -1.21
MSX1P28360 BX284613.1-201ENST00000452221 1641 ntBASIC7.48□□□□□ -1.21
MSX1P28360 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
MSX1P28360 IRAK4-201ENST00000431837 4147 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
MSX1P28360 CTNND1-222ENST00000529919 4780 ntTSL 5 BASIC7.48□□□□□ -1.21
MSX1P28360 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC7.48□□□□□ -1.21
MSX1P28360 NLRP3-206ENST00000391828 3853 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
MSX1P28360 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
MSX1P28360 THNSL1-202ENST00000524413 3788 ntAPPRIS P1 TSL 3 BASIC7.47□□□□□ -1.21
MSX1P28360 PACRG-202ENST00000366888 1373 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
MSX1P28360 EEF1A1P9-201ENST00000514975 1383 ntBASIC7.47□□□□□ -1.21
MSX1P28360 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC7.47□□□□□ -1.21
MSX1P28360 IAPP-205ENST00000542023 2015 ntTSL 2 BASIC7.47□□□□□ -1.21
MSX1P28360 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
MSX1P28360 LINC02367-201ENST00000567749 4388 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
MSX1P28360 LINC02059-202ENST00000506471 2094 ntTSL 2 BASIC7.47□□□□□ -1.21
MSX1P28360 AC061975.5-201ENST00000584928 1441 ntBASIC7.47□□□□□ -1.21
MSX1P28360 TRIM5-201ENST00000380027 2290 ntTSL 5 BASIC7.47□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms