Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC097721.1-201ENST00000427150 1253 ntBASIC5.63□□□□□ -1.51
SKA3Q8IX90 GTF3AP6-201ENST00000432585 986 ntBASIC5.63□□□□□ -1.51
SKA3Q8IX90 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SKA3Q8IX90 BX679664.2-201ENST00000439282 283 ntBASIC5.63□□□□□ -1.51
SKA3Q8IX90 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SKA3Q8IX90 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 AC025283.1-201ENST00000572039 734 ntBASIC5.63□□□□□ -1.51
SKA3Q8IX90 MIR3157-201ENST00000578688 85 ntBASIC5.63□□□□□ -1.51
SKA3Q8IX90 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 AC073046.2-201ENST00000604756 527 ntBASIC5.63□□□□□ -1.51
SKA3Q8IX90 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SKA3Q8IX90 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SKA3Q8IX90 AC105749.1-201ENST00000631338 2008 ntBASIC5.63□□□□□ -1.51
SKA3Q8IX90 GTF2IP4-201ENST00000453092 2054 ntBASIC5.63□□□□□ -1.51
SKA3Q8IX90 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SKA3Q8IX90 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SKA3Q8IX90 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SKA3Q8IX90 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
SKA3Q8IX90 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SKA3Q8IX90 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SKA3Q8IX90 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
SKA3Q8IX90 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SKA3Q8IX90 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SKA3Q8IX90 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SKA3Q8IX90 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
SKA3Q8IX90 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
SKA3Q8IX90 ACTR3C-201ENST00000252071 1218 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SKA3Q8IX90 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SKA3Q8IX90 RN7SKP237-201ENST00000364663 301 ntBASIC5.62□□□□□ -1.51
SKA3Q8IX90 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SKA3Q8IX90 RN7SKP129-201ENST00000410288 299 ntBASIC5.62□□□□□ -1.51
SKA3Q8IX90 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 AL139184.1-202ENST00000422303 222 ntBASIC5.62□□□□□ -1.51
SKA3Q8IX90 AL157884.1-201ENST00000424561 454 ntBASIC5.62□□□□□ -1.51
SKA3Q8IX90 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 AC245291.3-201ENST00000443400 292 ntBASIC5.62□□□□□ -1.51
SKA3Q8IX90 VN1R38P-201ENST00000450265 887 ntBASIC5.62□□□□□ -1.51
SKA3Q8IX90 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 AC108751.3-201ENST00000461814 1020 ntBASIC5.62□□□□□ -1.51
SKA3Q8IX90 CENPK-211ENST00000510693 1040 ntTSL 5 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 AC138517.1-201ENST00000515724 568 ntBASIC5.62□□□□□ -1.51
SKA3Q8IX90 IGKV1D-22-201ENST00000518953 324 ntBASIC5.62□□□□□ -1.51
SKA3Q8IX90 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 TDGP1-201ENST00000543961 1229 ntBASIC5.62□□□□□ -1.51
SKA3Q8IX90 AC073916.1-201ENST00000545095 130 ntBASIC5.62□□□□□ -1.51
SKA3Q8IX90 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 AL121579.2-201ENST00000555466 590 ntBASIC5.62□□□□□ -1.51
SKA3Q8IX90 NPM1P5-201ENST00000557228 838 ntBASIC5.62□□□□□ -1.51
SKA3Q8IX90 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 RN7SL475P-201ENST00000583379 298 ntBASIC5.62□□□□□ -1.51
SKA3Q8IX90 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 OR7A8P-201ENST00000595427 913 ntBASIC5.62□□□□□ -1.51
SKA3Q8IX90 AC005479.3-201ENST00000602790 431 ntBASIC5.62□□□□□ -1.51
SKA3Q8IX90 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 MIR6813-201ENST00000621638 56 ntBASIC5.62□□□□□ -1.51
SKA3Q8IX90 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
SKA3Q8IX90 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SKA3Q8IX90 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SKA3Q8IX90 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SKA3Q8IX90 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
SKA3Q8IX90 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SKA3Q8IX90 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
SKA3Q8IX90 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
SKA3Q8IX90 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SKA3Q8IX90 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
SKA3Q8IX90 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms