Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
COL18A1P39060 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC7.89□□□□□ -1.15
COL18A1P39060 RNA5SP211-201ENST00000365516 117 ntBASIC7.89□□□□□ -1.15
COL18A1P39060 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC7.89□□□□□ -1.15
COL18A1P39060 RNU4-34P-201ENST00000410431 124 ntBASIC7.89□□□□□ -1.15
COL18A1P39060 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC7.89□□□□□ -1.15
COL18A1P39060 RN7SL547P-201ENST00000490793 290 ntBASIC7.89□□□□□ -1.15
COL18A1P39060 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC7.89□□□□□ -1.15
COL18A1P39060 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC7.89□□□□□ -1.15
COL18A1P39060 FO082842.1-201ENST00000423552 1370 ntBASIC7.89□□□□□ -1.15
COL18A1P39060 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC7.88□□□□□ -1.15
COL18A1P39060 MTF1-201ENST00000373036 7972 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL18A1P39060 YES1P1-201ENST00000418510 1628 ntBASIC7.88□□□□□ -1.15
COL18A1P39060 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC7.88□□□□□ -1.15
COL18A1P39060 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL18A1P39060 ZNF438-208ENST00000538351 3284 ntAPPRIS ALT2 TSL 2 BASIC7.88□□□□□ -1.15
COL18A1P39060 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL18A1P39060 TENM2-203ENST00000518659 8550 ntAPPRIS P1 TSL 5 BASIC7.88□□□□□ -1.15
COL18A1P39060 ERC1-202ENST00000355446 5796 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL18A1P39060 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC7.88□□□□□ -1.15
COL18A1P39060 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC7.88□□□□□ -1.15
COL18A1P39060 SELE-203ENST00000367775 3389 ntTSL 5 BASIC7.88□□□□□ -1.15
COL18A1P39060 RNA5SP350-201ENST00000363298 111 ntBASIC7.88□□□□□ -1.15
COL18A1P39060 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC7.88□□□□□ -1.15
COL18A1P39060 CNOT7P2-201ENST00000441051 832 ntBASIC7.88□□□□□ -1.15
COL18A1P39060 AC005532.2-201ENST00000467154 373 ntBASIC7.88□□□□□ -1.15
COL18A1P39060 AC231760.1-201ENST00000498002 260 ntBASIC7.88□□□□□ -1.15
COL18A1P39060 AC024558.1-201ENST00000505008 528 ntBASIC7.88□□□□□ -1.15
COL18A1P39060 MINCR-206ENST00000524335 499 ntTSL 2 BASIC7.88□□□□□ -1.15
COL18A1P39060 AP005639.1-201ENST00000526939 192 ntBASIC7.88□□□□□ -1.15
COL18A1P39060 OR10G5P-201ENST00000532733 358 ntBASIC7.88□□□□□ -1.15
COL18A1P39060 MIR7155-201ENST00000615925 56 ntBASIC7.88□□□□□ -1.15
COL18A1P39060 AC136428.4-201ENST00000634254 1155 ntBASIC7.88□□□□□ -1.15
COL18A1P39060 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL18A1P39060 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC7.88□□□□□ -1.15
COL18A1P39060 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL18A1P39060 PARP4P2-201ENST00000446672 3326 ntBASIC7.88□□□□□ -1.15
COL18A1P39060 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL18A1P39060 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL18A1P39060 EML5-201ENST00000380664 5910 ntTSL 5 BASIC7.88□□□□□ -1.15
COL18A1P39060 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL18A1P39060 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC7.87□□□□□ -1.15
COL18A1P39060 IKZF3-203ENST00000346872 9667 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL18A1P39060 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL18A1P39060 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL18A1P39060 AC099677.3-201ENST00000427081 395 ntBASIC7.87□□□□□ -1.15
COL18A1P39060 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC7.87□□□□□ -1.15
COL18A1P39060 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC7.87□□□□□ -1.15
COL18A1P39060 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC7.87□□□□□ -1.15
COL18A1P39060 AC022215.1-201ENST00000481770 362 ntBASIC7.87□□□□□ -1.15
COL18A1P39060 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC7.87□□□□□ -1.15
COL18A1P39060 AC108043.1-201ENST00000512696 574 ntBASIC7.87□□□□□ -1.15
COL18A1P39060 RNA5SP92-201ENST00000516437 110 ntBASIC7.87□□□□□ -1.15
COL18A1P39060 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC7.87□□□□□ -1.15
COL18A1P39060 KCTD9P4-201ENST00000526766 1166 ntBASIC7.87□□□□□ -1.15
COL18A1P39060 OR4A40P-201ENST00000533878 948 ntBASIC7.87□□□□□ -1.15
COL18A1P39060 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC7.87□□□□□ -1.15
COL18A1P39060 UHRF1BP1-201ENST00000192788 9570 ntAPPRIS P2 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL18A1P39060 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC7.87□□□□□ -1.15
COL18A1P39060 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL18A1P39060 ZBTB40-204ENST00000404138 8992 ntAPPRIS P3 TSL 5 BASIC7.87□□□□□ -1.15
COL18A1P39060 AC011525.1-201ENST00000562167 5676 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL18A1P39060 ZNF827-203ENST00000508784 7463 ntAPPRIS ALT2 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL18A1P39060 PIGN-238ENST00000639758 4239 ntTSL 5 BASIC7.87□□□□□ -1.15
COL18A1P39060 AC015813.3-201ENST00000584805 6113 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL18A1P39060 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC7.87□□□□□ -1.15
COL18A1P39060 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC7.87□□□□□ -1.15
COL18A1P39060 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC7.87□□□□□ -1.15
COL18A1P39060 FBXL21-201ENST00000297158 1305 ntBASIC7.87□□□□□ -1.15
COL18A1P39060 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC7.87□□□□□ -1.15
COL18A1P39060 RNU1-19P-201ENST00000363306 165 ntBASIC7.87□□□□□ -1.15
COL18A1P39060 RNU1-24P-201ENST00000364285 165 ntBASIC7.87□□□□□ -1.15
COL18A1P39060 RN7SKP216-201ENST00000411050 312 ntBASIC7.87□□□□□ -1.15
COL18A1P39060 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL18A1P39060 AL663074.2-201ENST00000440621 479 ntBASIC7.87□□□□□ -1.15
COL18A1P39060 SPRYD7P1-201ENST00000443861 570 ntBASIC7.87□□□□□ -1.15
COL18A1P39060 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL18A1P39060 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC7.87□□□□□ -1.15
COL18A1P39060 RPL32P33-201ENST00000487023 394 ntBASIC7.87□□□□□ -1.15
COL18A1P39060 NDUFA5P12-201ENST00000503796 343 ntBASIC7.87□□□□□ -1.15
COL18A1P39060 BX510359.5-201ENST00000515651 304 ntBASIC7.87□□□□□ -1.15
COL18A1P39060 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC7.87□□□□□ -1.15
COL18A1P39060 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC7.87□□□□□ -1.15
COL18A1P39060 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC7.87□□□□□ -1.15
COL18A1P39060 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL18A1P39060 AC009166.2-201ENST00000624410 2833 ntBASIC7.86□□□□□ -1.15
COL18A1P39060 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL18A1P39060 TNR-202ENST00000367674 12949 ntAPPRIS P1 TSL 5 BASIC7.86□□□□□ -1.15
COL18A1P39060 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.15
COL18A1P39060 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL18A1P39060 COL6A6-201ENST00000358511 9581 ntAPPRIS P1 TSL 5 BASIC7.86□□□□□ -1.15
COL18A1P39060 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC7.86□□□□□ -1.15
COL18A1P39060 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC7.86□□□□□ -1.15
COL18A1P39060 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC7.86□□□□□ -1.15
COL18A1P39060 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC7.86□□□□□ -1.15
COL18A1P39060 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC7.86□□□□□ -1.15
COL18A1P39060 CASC19-205ENST00000641013 1411 ntBASIC7.86□□□□□ -1.15
COL18A1P39060 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL18A1P39060 RNA5SP131-201ENST00000365452 119 ntBASIC7.86□□□□□ -1.15
COL18A1P39060 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC7.86□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms