Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 FCF1-203ENST00000553615 954 ntTSL 3 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AC090826.1-203ENST00000569235 490 ntBASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AC011445.2-201ENST00000599274 173 ntBASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AC013731.1-201ENST00000604340 883 ntBASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AL157762.1-201ENST00000619612 415 ntBASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 OR1N1-202ENST00000619659 939 ntBASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AC087269.2-201ENST00000641764 975 ntBASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AC007406.5-201ENST00000570140 3170 ntBASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 MR1-209ENST00000617803 7584 ntTSL 5 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 CASC19-228ENST00000641414 1684 ntBASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 ACOT13-201ENST00000230048 4047 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 AL359694.2-201ENST00000567753 1615 ntBASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 VTCN1-201ENST00000328189 2289 ntTSL 5 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 SNORA51.1-201ENST00000363243 140 ntBASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 AL451046.1-201ENST00000406097 534 ntBASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 RN7SKP281-201ENST00000410472 352 ntBASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 AC010978.1-202ENST00000427050 893 ntTSL 3 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 AL354707.3-201ENST00000427308 331 ntBASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 CFAP58-AS1-201ENST00000435434 795 ntTSL 2 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 AL391987.1-201ENST00000441025 200 ntBASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 AC074386.1-201ENST00000476560 767 ntBASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 AC135999.1-201ENST00000478962 479 ntBASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 AC112184.1-201ENST00000505179 312 ntBASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 HMGN1P17-201ENST00000513734 295 ntBASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 COX6B1P4-201ENST00000519826 484 ntBASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 ASB8-203ENST00000535988 679 ntTSL 2 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 AC025171.4-201ENST00000607250 1047 ntBASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 AP001437.1-201ENST00000608783 456 ntBASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 AC005393.1-201ENST00000617916 584 ntBASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 AC018659.2-201ENST00000624690 715 ntBASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 CASC19-243ENST00000641588 1546 ntBASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 MAPK10-270ENST00000641102 3538 ntBASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
HDDC3Q8N4P3 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 ANKRD44-202ENST00000328737 3686 ntTSL 2 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 BRD7P6-201ENST00000431406 1860 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 KARSP1-201ENST00000451871 1752 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 AC110597.1-201ENST00000562669 3176 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 BTK-209ENST00000618050 2417 ntTSL 5 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 CDY10P-201ENST00000452415 1567 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 AL136531.3-201ENST00000624378 3658 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 RNU1-24P-201ENST00000364285 165 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 RNA5SP510-201ENST00000364697 99 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 SMARCE1P6-201ENST00000398372 1216 ntBASIC6.49□□□□□ -1.37
HDDC3Q8N4P3 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC6.49□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms