Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL590763.1-201ENST00000398297 1545 ntBASIC10.17□□□□□ -0.78
CUX1P39880 ADA2-203ENST00000399837 4505 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
CUX1P39880 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
CUX1P39880 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC10.17□□□□□ -0.78
CUX1P39880 AC025809.2-201ENST00000625085 1802 ntBASIC10.17□□□□□ -0.78
CUX1P39880 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC10.17□□□□□ -0.78
CUX1P39880 FAM19A2-211ENST00000550003 2499 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
CUX1P39880 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
CUX1P39880 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
CUX1P39880 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC10.17□□□□□ -0.78
CUX1P39880 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC10.17□□□□□ -0.78
CUX1P39880 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
CUX1P39880 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC10.17□□□□□ -0.78
CUX1P39880 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC10.17□□□□□ -0.78
CUX1P39880 FMO7P-201ENST00000436045 768 ntBASIC10.17□□□□□ -0.78
CUX1P39880 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC10.17□□□□□ -0.78
CUX1P39880 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC10.17□□□□□ -0.78
CUX1P39880 RPS17P15-201ENST00000475609 349 ntBASIC10.17□□□□□ -0.78
CUX1P39880 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC10.17□□□□□ -0.78
CUX1P39880 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC10.17□□□□□ -0.78
CUX1P39880 AP001496.3-201ENST00000580230 913 ntBASIC10.17□□□□□ -0.78
CUX1P39880 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC10.17□□□□□ -0.78
CUX1P39880 MALAT1-212ENST00000618132 725 ntTSL 2 BASIC10.17□□□□□ -0.78
CUX1P39880 AC021079.1-201ENST00000625268 907 ntTSL 3 BASIC10.17□□□□□ -0.78
CUX1P39880 TRPM3-204ENST00000360823 5966 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
CUX1P39880 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
CUX1P39880 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
CUX1P39880 SCUBE3-201ENST00000274938 7356 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
CUX1P39880 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
CUX1P39880 SOX5-202ENST00000381381 3991 ntTSL 5 BASIC10.16□□□□□ -0.78
CUX1P39880 SSBP2-201ENST00000320672 8780 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
CUX1P39880 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.78
CUX1P39880 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
CUX1P39880 OR4Q3-202ENST00000642117 2165 ntAPPRIS P1 BASIC10.16□□□□□ -0.78
CUX1P39880 AF131215.2-201ENST00000531549 1710 ntBASIC10.16□□□□□ -0.78
CUX1P39880 IL5RA-207ENST00000438560 2252 ntAPPRIS ALT2 TSL 2 BASIC10.16□□□□□ -0.78
CUX1P39880 RN7SKP128-201ENST00000364270 303 ntBASIC10.16□□□□□ -0.78
CUX1P39880 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC10.16□□□□□ -0.78
CUX1P39880 AC097721.1-201ENST00000427150 1253 ntBASIC10.16□□□□□ -0.78
CUX1P39880 AL133445.1-201ENST00000467051 452 ntBASIC10.16□□□□□ -0.78
CUX1P39880 PFN1P6-201ENST00000476786 399 ntBASIC10.16□□□□□ -0.78
CUX1P39880 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC10.16□□□□□ -0.78
CUX1P39880 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC10.16□□□□□ -0.78
CUX1P39880 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC10.16□□□□□ -0.78
CUX1P39880 PABPC1P6-201ENST00000445594 1829 ntBASIC10.16□□□□□ -0.78
CUX1P39880 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC10.16□□□□□ -0.78
CUX1P39880 NEK1-208ENST00000512193 4430 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
CUX1P39880 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC10.16□□□□□ -0.78
CUX1P39880 AC092111.1-201ENST00000618256 3358 ntBASIC10.15□□□□□ -0.78
CUX1P39880 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
CUX1P39880 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC10.15□□□□□ -0.78
CUX1P39880 PREPL-203ENST00000378520 2308 ntTSL 5 BASIC10.15□□□□□ -0.78
CUX1P39880 LARS-212ENST00000510191 3737 ntTSL 2 BASIC10.15□□□□□ -0.78
CUX1P39880 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC10.15□□□□□ -0.78
CUX1P39880 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC10.15□□□□□ -0.78
CUX1P39880 ZNF385D-AS1-201ENST00000412369 705 ntTSL 3 BASIC10.15□□□□□ -0.78
CUX1P39880 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC10.15□□□□□ -0.78
CUX1P39880 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC10.15□□□□□ -0.78
CUX1P39880 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC10.15□□□□□ -0.78
CUX1P39880 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC10.15□□□□□ -0.78
CUX1P39880 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC10.15□□□□□ -0.78
CUX1P39880 OR7A1P-201ENST00000601206 970 ntBASIC10.15□□□□□ -0.78
CUX1P39880 AC097467.4-201ENST00000605504 141 ntBASIC10.15□□□□□ -0.78
CUX1P39880 AC007204.2-201ENST00000615022 616 ntBASIC10.15□□□□□ -0.78
CUX1P39880 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC10.15□□□□□ -0.78
CUX1P39880 AL031595.3-201ENST00000624919 14262 ntBASIC10.15□□□□□ -0.78
CUX1P39880 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.78
CUX1P39880 UTY-209ENST00000537580 6490 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
CUX1P39880 KCNMA1-212ENST00000406533 5639 ntAPPRIS ALT2 TSL 5 BASIC10.15□□□□□ -0.78
CUX1P39880 AL358394.2-201ENST00000427229 3637 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
CUX1P39880 SIPA1L1-203ENST00000537413 4129 ntTSL 2 BASIC10.15□□□□□ -0.78
CUX1P39880 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
CUX1P39880 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.79
CUX1P39880 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.79
CUX1P39880 ENAH-204ENST00000366844 13168 ntAPPRIS P4 TSL 1 (best) BASIC10.14□□□□□ -0.79
CUX1P39880 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
CUX1P39880 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC10.14□□□□□ -0.79
CUX1P39880 FRY-207ENST00000542859 13200 ntAPPRIS P1 TSL 5 BASIC10.14□□□□□ -0.79
CUX1P39880 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
CUX1P39880 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC10.14□□□□□ -0.79
CUX1P39880 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC10.14□□□□□ -0.79
CUX1P39880 RPS7P3-201ENST00000443360 580 ntBASIC10.14□□□□□ -0.79
CUX1P39880 AC104164.1-201ENST00000460282 590 ntBASIC10.14□□□□□ -0.79
CUX1P39880 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC10.14□□□□□ -0.79
CUX1P39880 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC10.14□□□□□ -0.79
CUX1P39880 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC10.14□□□□□ -0.79
CUX1P39880 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC10.14□□□□□ -0.79
CUX1P39880 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC10.14□□□□□ -0.79
CUX1P39880 MIR4505-201ENST00000582238 73 ntBASIC10.14□□□□□ -0.79
CUX1P39880 HOTTIP_3.1-201ENST00000619957 337 ntBASIC10.14□□□□□ -0.79
CUX1P39880 KIF1B-202ENST00000377081 8746 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
CUX1P39880 LEPR-203ENST00000371058 2805 ntTSL 5 BASIC10.14□□□□□ -0.79
CUX1P39880 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC10.14□□□□□ -0.79
CUX1P39880 GABRB3-216ENST00000628124 5581 ntTSL 2 BASIC10.14□□□□□ -0.79
CUX1P39880 AC241584.2-201ENST00000637142 2090 ntBASIC10.14□□□□□ -0.79
CUX1P39880 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
CUX1P39880 ZNFX1-202ENST00000371752 7212 ntAPPRIS P1 TSL 5 BASIC10.13□□□□□ -0.79
CUX1P39880 AC126120.1-201ENST00000431082 470 ntBASIC10.13□□□□□ -0.79
CUX1P39880 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC10.13□□□□□ -0.79
CUX1P39880 AC099786.1-201ENST00000446238 670 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 143.8 ms