Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.23
SCN4AP35499 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC7.34□□□□□ -1.23
SCN4AP35499 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.23
SCN4AP35499 LYRM4-201ENST00000330636 7312 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.24
SCN4AP35499 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.24
SCN4AP35499 NECAP1-221ENST00000639955 3479 ntAPPRIS P2 TSL 5 BASIC7.34□□□□□ -1.24
SCN4AP35499 AC135068.1-201ENST00000332663 1084 ntAPPRIS P1 BASIC7.34□□□□□ -1.24
SCN4AP35499 SNORA43.1-201ENST00000364863 140 ntBASIC7.34□□□□□ -1.24
SCN4AP35499 AL596448.1-201ENST00000415024 392 ntBASIC7.34□□□□□ -1.24
SCN4AP35499 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC7.34□□□□□ -1.24
SCN4AP35499 CFL1P1-202ENST00000432948 411 ntBASIC7.34□□□□□ -1.24
SCN4AP35499 SEPT14P12-201ENST00000442280 560 ntBASIC7.34□□□□□ -1.24
SCN4AP35499 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC7.34□□□□□ -1.24
SCN4AP35499 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC7.34□□□□□ -1.24
SCN4AP35499 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC7.34□□□□□ -1.24
SCN4AP35499 HMGN2P36-201ENST00000529541 409 ntBASIC7.34□□□□□ -1.24
SCN4AP35499 CASP5-209ENST00000531367 879 ntTSL 5 BASIC7.34□□□□□ -1.24
SCN4AP35499 AC096861.1-201ENST00000616652 240 ntBASIC7.34□□□□□ -1.24
SCN4AP35499 AL357562.1-201ENST00000624911 609 ntBASIC7.34□□□□□ -1.24
SCN4AP35499 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.24
SCN4AP35499 VPS8-210ENST00000446204 4721 ntTSL 1 (best) BASIC7.34□□□□□ -1.24
SCN4AP35499 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.24
SCN4AP35499 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC7.33□□□□□ -1.24
SCN4AP35499 AC015871.3-201ENST00000618835 2261 ntBASIC7.33□□□□□ -1.24
SCN4AP35499 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SCN4AP35499 AC011416.1-201ENST00000514947 1732 ntBASIC7.33□□□□□ -1.24
SCN4AP35499 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC7.33□□□□□ -1.24
SCN4AP35499 ZFX-204ENST00000379188 7513 ntTSL 5 BASIC7.33□□□□□ -1.24
SCN4AP35499 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC7.33□□□□□ -1.24
SCN4AP35499 EPB41-201ENST00000343067 5956 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.24
SCN4AP35499 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SCN4AP35499 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SCN4AP35499 ADGRL3-213ENST00000509896 5069 ntTSL 5 BASIC7.33□□□□□ -1.24
SCN4AP35499 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SCN4AP35499 KCNIP4-201ENST00000359001 2168 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SCN4AP35499 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC7.33□□□□□ -1.24
SCN4AP35499 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC7.33□□□□□ -1.24
SCN4AP35499 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC7.33□□□□□ -1.24
SCN4AP35499 AC062029.1-202ENST00000606164 3651 ntBASIC7.33□□□□□ -1.24
SCN4AP35499 SPHKAP-202ENST00000392056 6917 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
SCN4AP35499 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SCN4AP35499 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SCN4AP35499 FABP12P1-201ENST00000401911 322 ntBASIC7.33□□□□□ -1.24
SCN4AP35499 AL023284.3-201ENST00000407767 334 ntBASIC7.33□□□□□ -1.24
SCN4AP35499 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC7.33□□□□□ -1.24
SCN4AP35499 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC7.33□□□□□ -1.24
SCN4AP35499 OR4A13P-201ENST00000529316 942 ntBASIC7.33□□□□□ -1.24
SCN4AP35499 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC7.33□□□□□ -1.24
SCN4AP35499 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC7.33□□□□□ -1.24
SCN4AP35499 FAM27E4-201ENST00000605259 342 ntBASIC7.33□□□□□ -1.24
SCN4AP35499 NCAPH-205ENST00000455200 2952 ntAPPRIS ALT2 TSL 5 BASIC7.33□□□□□ -1.24
SCN4AP35499 TNFRSF19-203ENST00000382263 4151 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
SCN4AP35499 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC7.33□□□□□ -1.24
SCN4AP35499 ZNF37A-201ENST00000351773 7027 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SCN4AP35499 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC7.32□□□□□ -1.24
SCN4AP35499 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
SCN4AP35499 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC7.32□□□□□ -1.24
SCN4AP35499 KLC1-204ENST00000348520 15091 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SCN4AP35499 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SCN4AP35499 CCDC125-201ENST00000383374 2006 ntTSL 5 BASIC7.32□□□□□ -1.24
SCN4AP35499 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC7.32□□□□□ -1.24
SCN4AP35499 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SCN4AP35499 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SCN4AP35499 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC7.32□□□□□ -1.24
SCN4AP35499 AL645927.1-201ENST00000396783 406 ntBASIC7.32□□□□□ -1.24
SCN4AP35499 AL133270.1-201ENST00000402635 279 ntBASIC7.32□□□□□ -1.24
SCN4AP35499 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC7.32□□□□□ -1.24
SCN4AP35499 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC7.32□□□□□ -1.24
SCN4AP35499 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC7.32□□□□□ -1.24
SCN4AP35499 AL139148.1-201ENST00000427122 680 ntBASIC7.32□□□□□ -1.24
SCN4AP35499 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC7.32□□□□□ -1.24
SCN4AP35499 AC091390.2-201ENST00000432573 374 ntBASIC7.32□□□□□ -1.24
SCN4AP35499 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC7.32□□□□□ -1.24
SCN4AP35499 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC7.32□□□□□ -1.24
SCN4AP35499 AC016027.4-201ENST00000450866 277 ntBASIC7.32□□□□□ -1.24
SCN4AP35499 AC091685.2-201ENST00000454924 864 ntBASIC7.32□□□□□ -1.24
SCN4AP35499 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC7.32□□□□□ -1.24
SCN4AP35499 AC093763.2-201ENST00000505334 1223 ntBASIC7.32□□□□□ -1.24
SCN4AP35499 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC7.32□□□□□ -1.24
SCN4AP35499 AC006530.1-201ENST00000555980 571 ntBASIC7.32□□□□□ -1.24
SCN4AP35499 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC7.32□□□□□ -1.24
SCN4AP35499 MIR4776-2-201ENST00000580204 80 ntBASIC7.32□□□□□ -1.24
SCN4AP35499 AC005393.1-201ENST00000617916 584 ntBASIC7.32□□□□□ -1.24
SCN4AP35499 MIR193BHG-214ENST00000641765 509 ntBASIC7.32□□□□□ -1.24
SCN4AP35499 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.24
SCN4AP35499 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC7.32□□□□□ -1.24
SCN4AP35499 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.24
SCN4AP35499 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC7.32□□□□□ -1.24
SCN4AP35499 ECT2-206ENST00000417960 4363 ntAPPRIS ALT1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SCN4AP35499 RAPGEF5-202ENST00000401957 6159 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SCN4AP35499 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
SCN4AP35499 KPNA6-201ENST00000373625 7378 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SCN4AP35499 MRPS23-201ENST00000313608 5621 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SCN4AP35499 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SCN4AP35499 NUP155-201ENST00000231498 8143 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SCN4AP35499 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC7.31□□□□□ -1.24
SCN4AP35499 LINC02019-201ENST00000608605 2060 ntBASIC7.31□□□□□ -1.24
SCN4AP35499 FNDC3A-204ENST00000492622 6286 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SCN4AP35499 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC7.31□□□□□ -1.24
SCN4AP35499 NME1P1-201ENST00000420914 382 ntBASIC7.31□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms