Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ATP8A1-201ENST00000264449 8209 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A3P12111 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A3P12111 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A3P12111 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC6.13□□□□□ -1.43
COL6A3P12111 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC6.13□□□□□ -1.43
COL6A3P12111 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
COL6A3P12111 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC6.13□□□□□ -1.43
COL6A3P12111 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC6.13□□□□□ -1.43
COL6A3P12111 AC005084.1-201ENST00000605160 304 ntBASIC6.13□□□□□ -1.43
COL6A3P12111 AC131009.3-201ENST00000621809 287 ntBASIC6.13□□□□□ -1.43
COL6A3P12111 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.13□□□□□ -1.43
COL6A3P12111 DOCK11-202ENST00000276204 6664 ntAPPRIS ALT1 TSL 5 BASIC6.13□□□□□ -1.43
COL6A3P12111 FLNB-201ENST00000295956 9463 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A3P12111 AL031123.3-201ENST00000623345 1837 ntBASIC6.13□□□□□ -1.43
COL6A3P12111 KIAA1644-201ENST00000381176 6751 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
COL6A3P12111 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC6.13□□□□□ -1.43
COL6A3P12111 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A3P12111 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A3P12111 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC6.13□□□□□ -1.43
COL6A3P12111 PPIP5K1-202ENST00000348806 5433 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
COL6A3P12111 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC6.13□□□□□ -1.43
COL6A3P12111 BRDT-202ENST00000362005 3409 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A3P12111 AL138756.1-201ENST00000563434 4488 ntTSL 2 BASIC6.13□□□□□ -1.43
COL6A3P12111 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC6.13□□□□□ -1.43
COL6A3P12111 LINC00506-203ENST00000629295 4300 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A3P12111 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 SNORA37-201ENST00000384504 129 ntBASIC6.12□□□□□ -1.43
COL6A3P12111 AL139039.2-201ENST00000407436 479 ntBASIC6.12□□□□□ -1.43
COL6A3P12111 AL133173.1-201ENST00000423458 397 ntBASIC6.12□□□□□ -1.43
COL6A3P12111 CHIAP3-201ENST00000423668 1133 ntBASIC6.12□□□□□ -1.43
COL6A3P12111 AC016027.4-201ENST00000450866 277 ntBASIC6.12□□□□□ -1.43
COL6A3P12111 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC6.12□□□□□ -1.43
COL6A3P12111 SCARNA6.1-201ENST00000516989 238 ntBASIC6.12□□□□□ -1.43
COL6A3P12111 AL121834.1-201ENST00000572284 509 ntBASIC6.12□□□□□ -1.43
COL6A3P12111 SAMMSON-209ENST00000641222 1100 ntBASIC6.12□□□□□ -1.43
COL6A3P12111 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 NSA2-205ENST00000610426 4594 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 ADAM10-201ENST00000260408 11431 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 PCDH11Y-202ENST00000333703 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC6.12□□□□□ -1.43
COL6A3P12111 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 DDX3X-217ENST00000629496 5023 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
COL6A3P12111 NIPAL3-201ENST00000003912 5481 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 WDR36-206ENST00000612402 6592 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 DHX32-202ENST00000368721 2389 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
COL6A3P12111 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
COL6A3P12111 RNU1-77P-201ENST00000390868 162 ntBASIC6.12□□□□□ -1.43
COL6A3P12111 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC6.12□□□□□ -1.43
COL6A3P12111 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC6.12□□□□□ -1.43
COL6A3P12111 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC6.12□□□□□ -1.43
COL6A3P12111 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC6.12□□□□□ -1.43
COL6A3P12111 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC6.12□□□□□ -1.43
COL6A3P12111 MYLK-221ENST00000583087 678 ntTSL 4 BASIC6.12□□□□□ -1.43
COL6A3P12111 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 LARS-202ENST00000394434 4766 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
COL6A3P12111 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC6.12□□□□□ -1.43
COL6A3P12111 AC132825.1-201ENST00000463573 2247 ntBASIC6.12□□□□□ -1.43
COL6A3P12111 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC6.12□□□□□ -1.43
COL6A3P12111 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 CTAGE1-201ENST00000391403 4313 ntAPPRIS P2 BASIC6.12□□□□□ -1.43
COL6A3P12111 THSD7A-202ENST00000423059 10663 ntAPPRIS P2 TSL 5 BASIC6.12□□□□□ -1.43
COL6A3P12111 TRPM3-210ENST00000377111 4618 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 SERPINB4-201ENST00000341074 1749 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 NPL-201ENST00000258317 2461 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 AC008467.1-201ENST00000512693 5471 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
COL6A3P12111 SLC25A3-203ENST00000401722 6087 ntAPPRIS ALT1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 AL050335.1-201ENST00000396909 869 ntBASIC6.12□□□□□ -1.43
COL6A3P12111 AC114755.4-201ENST00000439114 443 ntBASIC6.12□□□□□ -1.43
COL6A3P12111 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC6.12□□□□□ -1.43
COL6A3P12111 AC091563.1-201ENST00000520544 490 ntTSL 3 BASIC6.12□□□□□ -1.43
COL6A3P12111 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC6.12□□□□□ -1.43
COL6A3P12111 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC6.12□□□□□ -1.43
COL6A3P12111 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A3P12111 TTC30A-201ENST00000355689 5975 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
COL6A3P12111 GTF2IP4-201ENST00000453092 2054 ntBASIC6.11□□□□□ -1.43
COL6A3P12111 POLR1B-203ENST00000409894 4457 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 GOLGA8N-201ENST00000448387 5329 ntAPPRIS P2 TSL 5 BASIC6.11□□□□□ -1.43
COL6A3P12111 EXOC4-201ENST00000253861 4185 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 DNAJC27-AS1-205ENST00000434897 4660 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 LRRC37A2-203ENST00000576629 5669 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
COL6A3P12111 CUL4A-212ENST00000617546 5666 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 CLIP1-219ENST00000620786 5913 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
COL6A3P12111 PGM3-212ENST00000513973 6107 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A3P12111 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC6.11□□□□□ -1.43
COL6A3P12111 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC6.11□□□□□ -1.43
COL6A3P12111 RPS27AP7-201ENST00000422792 455 ntBASIC6.11□□□□□ -1.43
COL6A3P12111 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
COL6A3P12111 CYCSP42-201ENST00000450823 238 ntBASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms