Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.15□□□□□ -1.42
COL6A3P12111 SEMA6D-202ENST00000354744 5931 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL6A3P12111 RPL7L1-208ENST00000493763 4476 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL6A3P12111 ZZEF1-201ENST00000381638 11456 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL6A3P12111 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC6.15□□□□□ -1.42
COL6A3P12111 GOLGA8F-201ENST00000526619 5237 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL6A3P12111 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.42
COL6A3P12111 ZNF217-202ENST00000371471 5796 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
COL6A3P12111 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL6A3P12111 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL6A3P12111 ATP11A-212ENST00000487903 8858 ntAPPRIS P2 TSL 5 BASIC6.15□□□□□ -1.43
COL6A3P12111 AP003170.5-201ENST00000397185 335 ntBASIC6.15□□□□□ -1.43
COL6A3P12111 CYCSP6-201ENST00000434498 302 ntBASIC6.15□□□□□ -1.43
COL6A3P12111 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
COL6A3P12111 AL049872.1-201ENST00000556323 322 ntBASIC6.15□□□□□ -1.43
COL6A3P12111 UQCRB-201ENST00000287022 5575 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL6A3P12111 AP001541.1-201ENST00000623322 1904 ntBASIC6.15□□□□□ -1.43
COL6A3P12111 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.43
COL6A3P12111 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL6A3P12111 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL6A3P12111 IRAK1BP1-201ENST00000369940 5656 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL6A3P12111 SP3-201ENST00000310015 6359 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL6A3P12111 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL6A3P12111 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL6A3P12111 ADGRE2-201ENST00000315576 6767 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A3P12111 STARD13-201ENST00000255486 5798 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A3P12111 AL159987.1-201ENST00000347911 293 ntBASIC6.14□□□□□ -1.43
COL6A3P12111 ZMYND8-204ENST00000355972 5542 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
COL6A3P12111 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A3P12111 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC6.14□□□□□ -1.43
COL6A3P12111 STARD13-204ENST00000399365 5784 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A3P12111 BMS1P19-201ENST00000433925 393 ntBASIC6.14□□□□□ -1.43
COL6A3P12111 AL445928.1-201ENST00000435545 222 ntBASIC6.14□□□□□ -1.43
COL6A3P12111 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC6.14□□□□□ -1.43
COL6A3P12111 GAPDHP23-201ENST00000444823 993 ntBASIC6.14□□□□□ -1.43
COL6A3P12111 RPL7P45-201ENST00000455851 743 ntBASIC6.14□□□□□ -1.43
COL6A3P12111 TXNP4-201ENST00000575018 310 ntBASIC6.14□□□□□ -1.43
COL6A3P12111 AC119403.2-201ENST00000590960 598 ntBASIC6.14□□□□□ -1.43
COL6A3P12111 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC6.14□□□□□ -1.43
COL6A3P12111 DPCR1-201ENST00000304311 2658 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
COL6A3P12111 ATP2B1-204ENST00000428670 7032 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
COL6A3P12111 AR-208ENST00000612452 10676 ntTSL 5 BASIC6.14□□□□□ -1.43
COL6A3P12111 SLC39A9-201ENST00000031146 5192 ntTSL 5 BASIC6.14□□□□□ -1.43
COL6A3P12111 POLR1B-217ENST00000541869 5059 ntTSL 2 BASIC6.14□□□□□ -1.43
COL6A3P12111 STAMBP-202ENST00000394070 6691 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A3P12111 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC6.14□□□□□ -1.43
COL6A3P12111 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC6.14□□□□□ -1.43
COL6A3P12111 ZDHHC20P1-204ENST00000435787 423 ntBASIC6.14□□□□□ -1.43
COL6A3P12111 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC6.14□□□□□ -1.43
COL6A3P12111 AC093283.1-201ENST00000565306 1075 ntBASIC6.14□□□□□ -1.43
COL6A3P12111 AL035422.2-201ENST00000603059 565 ntBASIC6.14□□□□□ -1.43
COL6A3P12111 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC6.14□□□□□ -1.43
COL6A3P12111 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A3P12111 CDH18-207ENST00000507958 3542 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
COL6A3P12111 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A3P12111 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A3P12111 SPOCK1-201ENST00000282223 4488 ntTSL 5 BASIC6.14□□□□□ -1.43
COL6A3P12111 RNA5SP387-201ENST00000364226 106 ntBASIC6.14□□□□□ -1.43
COL6A3P12111 CRP-204ENST00000368112 787 ntTSL 2 BASIC6.14□□□□□ -1.43
COL6A3P12111 RNU6-398P-201ENST00000384143 109 ntBASIC6.14□□□□□ -1.43
COL6A3P12111 AL590762.1-201ENST00000391782 432 ntBASIC6.14□□□□□ -1.43
COL6A3P12111 AC068138.1-201ENST00000412635 217 ntBASIC6.14□□□□□ -1.43
COL6A3P12111 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC6.14□□□□□ -1.43
COL6A3P12111 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC6.14□□□□□ -1.43
COL6A3P12111 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC6.14□□□□□ -1.43
COL6A3P12111 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC6.14□□□□□ -1.43
COL6A3P12111 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC6.14□□□□□ -1.43
COL6A3P12111 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC6.14□□□□□ -1.43
COL6A3P12111 AC132068.1-201ENST00000623805 459 ntBASIC6.14□□□□□ -1.43
COL6A3P12111 OTOG-203ENST00000399397 9948 ntAPPRIS P3 TSL 5 BASIC6.14□□□□□ -1.43
COL6A3P12111 UTY-216ENST00000624098 3636 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A3P12111 FRMPD2-213ENST00000636244 4194 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
COL6A3P12111 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A3P12111 ZBTB39-201ENST00000300101 6170 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A3P12111 TSC22D2-201ENST00000361875 11154 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A3P12111 OR1I1-202ENST00000641398 5984 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
COL6A3P12111 PHF6-202ENST00000370799 4186 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A3P12111 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
COL6A3P12111 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC6.13□□□□□ -1.43
COL6A3P12111 WDR64-204ENST00000437684 2310 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A3P12111 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
COL6A3P12111 COL11A1-203ENST00000370096 7286 ntAPPRIS P4 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A3P12111 ZNF264-201ENST00000263095 12163 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
COL6A3P12111 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC6.13□□□□□ -1.43
COL6A3P12111 AC073264.2-201ENST00000448886 166 ntBASIC6.13□□□□□ -1.43
COL6A3P12111 AC090638.1-201ENST00000498296 909 ntBASIC6.13□□□□□ -1.43
COL6A3P12111 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A3P12111 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC6.13□□□□□ -1.43
COL6A3P12111 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC6.13□□□□□ -1.43
COL6A3P12111 MIR4675-201ENST00000577898 77 ntBASIC6.13□□□□□ -1.43
COL6A3P12111 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
COL6A3P12111 AL390318.1-201ENST00000624564 687 ntBASIC6.13□□□□□ -1.43
COL6A3P12111 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC6.13□□□□□ -1.43
COL6A3P12111 PRRC2B-202ENST00000357304 11042 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
COL6A3P12111 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A3P12111 CGNL1-201ENST00000281282 7224 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL6A3P12111 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC6.13□□□□□ -1.43
COL6A3P12111 BTBD3-215ENST00000618918 4486 ntAPPRIS ALT1 TSL 4 BASIC6.13□□□□□ -1.43
COL6A3P12111 TRIM60P19-201ENST00000452879 1462 ntBASIC6.13□□□□□ -1.43
COL6A3P12111 HAUS6-202ENST00000380502 6536 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms