Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 REV3L-214ENST00000619481 969 ntTSL 5 BASIC8.49□□□□□ -1.05
HLA-CQ95604 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC8.49□□□□□ -1.05
HLA-CQ95604 AC002550.2-201ENST00000621246 394 ntBASIC8.49□□□□□ -1.05
HLA-CQ95604 NUDCD1-201ENST00000239690 4217 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HLA-CQ95604 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC8.49□□□□□ -1.05
HLA-CQ95604 SLC7A8-206ENST00000469263 3557 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
HLA-CQ95604 NSRP1P1-201ENST00000444067 1693 ntBASIC8.49□□□□□ -1.05
HLA-CQ95604 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HLA-CQ95604 AC109315.1-201ENST00000584143 1347 ntBASIC8.49□□□□□ -1.05
HLA-CQ95604 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC8.49□□□□□ -1.05
HLA-CQ95604 MSH2-202ENST00000406134 3628 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
HLA-CQ95604 SF3B2-206ENST00000528302 3254 ntTSL 5 BASIC8.49□□□□□ -1.05
HLA-CQ95604 LIG3-202ENST00000378526 8400 ntAPPRIS P4 TSL 1 (best) BASIC8.49□□□□□ -1.05
HLA-CQ95604 EVI2A-203ENST00000462804 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC8.49□□□□□ -1.05
HLA-CQ95604 SSR1-210ENST00000489567 1893 ntTSL 3 BASIC8.49□□□□□ -1.05
HLA-CQ95604 STT3A-201ENST00000392708 4558 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HLA-CQ95604 QRSL1P1-201ENST00000400977 1540 ntBASIC8.49□□□□□ -1.05
HLA-CQ95604 AC090181.3-201ENST00000624777 1514 ntBASIC8.49□□□□□ -1.05
HLA-CQ95604 LIMCH1-219ENST00000514096 3543 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
HLA-CQ95604 ABLIM1-206ENST00000392952 6841 ntTSL 5 BASIC8.49□□□□□ -1.05
HLA-CQ95604 RCAN1-207ENST00000481448 2816 ntTSL 5 BASIC8.48□□□□□ -1.05
HLA-CQ95604 VPS11-206ENST00000614944 3388 ntTSL 2 BASIC8.48□□□□□ -1.05
HLA-CQ95604 IDI2-201ENST00000277517 1359 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
HLA-CQ95604 LIN9-205ENST00000481685 1916 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
HLA-CQ95604 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC8.48□□□□□ -1.05
HLA-CQ95604 ZNF226-213ENST00000588883 5972 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
HLA-CQ95604 ARHGAP42P2-201ENST00000416089 2140 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 CEP57-201ENST00000325486 3098 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
HLA-CQ95604 DYRK4-211ENST00000540757 3272 ntAPPRIS P2 TSL 1 (best) BASIC8.48□□□□□ -1.05
HLA-CQ95604 ADH4-201ENST00000265512 1993 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
HLA-CQ95604 C2orf42-205ENST00000420306 2193 ntAPPRIS P1 TSL 2 BASIC8.48□□□□□ -1.05
HLA-CQ95604 RBPJP6-201ENST00000411556 1431 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 AL391380.1-201ENST00000439300 1432 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 AC061975.5-201ENST00000584928 1441 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 AL356235.1-201ENST00000602791 2363 ntTSL 2 BASIC8.48□□□□□ -1.05
HLA-CQ95604 AP000552.1-202ENST00000436681 3714 ntTSL 5 BASIC8.48□□□□□ -1.05
HLA-CQ95604 AL512310.11-201ENST00000611741 1837 ntTSL 5 BASIC8.48□□□□□ -1.05
HLA-CQ95604 MR1-205ENST00000434571 7479 ntTSL 5 BASIC8.48□□□□□ -1.05
HLA-CQ95604 METAP2-202ENST00000323666 3601 ntAPPRIS P3 TSL 1 (best) BASIC8.48□□□□□ -1.05
HLA-CQ95604 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
HLA-CQ95604 Y_RNA.295-201ENST00000364918 102 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 RNU4-31P-201ENST00000384211 141 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 SNORD65.1-201ENST00000390889 71 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 AC084880.1-201ENST00000392530 545 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 AC092952.1-201ENST00000397646 1209 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 AL034417.1-201ENST00000399343 800 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC8.48□□□□□ -1.05
HLA-CQ95604 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC8.48□□□□□ -1.05
HLA-CQ95604 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC8.48□□□□□ -1.05
HLA-CQ95604 GAPDHP69-201ENST00000425504 1008 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 ELOCP14-201ENST00000428070 331 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 RPL34P27-201ENST00000428810 349 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 HSPD1P12-201ENST00000429127 1069 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 RPL31P54-201ENST00000429803 370 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 MTCYBP45-201ENST00000435243 565 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 ELOCP7-201ENST00000439968 331 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC8.48□□□□□ -1.05
HLA-CQ95604 RPL39P6-201ENST00000448289 150 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC8.48□□□□□ -1.05
HLA-CQ95604 AC022730.2-201ENST00000465359 452 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 AC020636.1-201ENST00000469268 565 ntTSL 4 BASIC8.48□□□□□ -1.05
HLA-CQ95604 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC8.48□□□□□ -1.05
HLA-CQ95604 AC108078.1-201ENST00000508073 725 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 CYP4F27P-201ENST00000514557 494 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 RNU6-1225P-201ENST00000516336 65 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 IGHVIII-13-1-201ENST00000517613 291 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 AP001893.2-201ENST00000526949 202 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 AC087379.2-201ENST00000532242 471 ntTSL 3 BASIC8.48□□□□□ -1.05
HLA-CQ95604 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC8.48□□□□□ -1.05
HLA-CQ95604 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC8.48□□□□□ -1.05
HLA-CQ95604 NPIPP1-203ENST00000547107 1071 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC8.48□□□□□ -1.05
HLA-CQ95604 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
HLA-CQ95604 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC8.48□□□□□ -1.05
HLA-CQ95604 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC8.48□□□□□ -1.05
HLA-CQ95604 HMGB1P33-201ENST00000563485 527 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 AC010980.1-204ENST00000589724 585 ntTSL 5 BASIC8.48□□□□□ -1.05
HLA-CQ95604 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC8.48□□□□□ -1.05
HLA-CQ95604 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
HLA-CQ95604 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
HLA-CQ95604 AC244153.1-204ENST00000615582 401 ntTSL 2 BASIC8.48□□□□□ -1.05
HLA-CQ95604 AC002401.3-201ENST00000620020 440 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 NR1I3-235ENST00000628566 1201 ntTSL 5 BASIC8.48□□□□□ -1.05
HLA-CQ95604 MTND5P42-201ENST00000637720 498 ntBASIC8.48□□□□□ -1.05
HLA-CQ95604 IL13RA2-202ENST00000371936 1498 ntAPPRIS P1 TSL 5 BASIC8.48□□□□□ -1.05
HLA-CQ95604 CLIP1-218ENST00000545889 4633 ntTSL 5 BASIC8.48□□□□□ -1.05
HLA-CQ95604 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC8.48□□□□□ -1.05
HLA-CQ95604 ELOVL5-207ENST00000542638 2875 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
HLA-CQ95604 MEIS2-203ENST00000340545 3056 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
HLA-CQ95604 OTOA-202ENST00000388956 3466 ntAPPRIS ALT2 TSL 2 BASIC8.48□□□□□ -1.05
HLA-CQ95604 SSBP2-212ENST00000509053 1534 ntTSL 2 BASIC8.48□□□□□ -1.05
HLA-CQ95604 GID8-201ENST00000266069 4397 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
HLA-CQ95604 FRMD6-201ENST00000344768 2972 ntTSL 2 BASIC8.48□□□□□ -1.05
HLA-CQ95604 NRXN3-202ENST00000335750 2764 ntTSL 5 BASIC8.48□□□□□ -1.05
HLA-CQ95604 TNFAIP3-210ENST00000620204 3817 ntTSL 5 BASIC8.48□□□□□ -1.05
HLA-CQ95604 ITIH3-202ENST00000449956 3007 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
HLA-CQ95604 FOXN3-202ENST00000345097 7832 ntAPPRIS ALT1 TSL 1 (best) BASIC8.48□□□□□ -1.05
HLA-CQ95604 FBXL17-206ENST00000619412 4059 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
HLA-CQ95604 SLFN12-206ENST00000452764 2423 ntAPPRIS P1 TSL 2 BASIC8.48□□□□□ -1.05
HLA-CQ95604 CELF2-205ENST00000542579 7982 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms