Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 IGKV1D-22-201ENST00000518953 324 ntBASIC6.66□□□□□ -1.34
HOXA9P31269 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC6.66□□□□□ -1.34
HOXA9P31269 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC6.66□□□□□ -1.34
HOXA9P31269 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HOXA9P31269 AC012146.2-201ENST00000576545 416 ntBASIC6.66□□□□□ -1.34
HOXA9P31269 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC6.66□□□□□ -1.34
HOXA9P31269 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC6.66□□□□□ -1.34
HOXA9P31269 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC6.66□□□□□ -1.34
HOXA9P31269 AC092681.3-201ENST00000609463 678 ntBASIC6.66□□□□□ -1.34
HOXA9P31269 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC6.66□□□□□ -1.34
HOXA9P31269 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HOXA9P31269 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
HOXA9P31269 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HOXA9P31269 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC6.66□□□□□ -1.34
HOXA9P31269 AL354854.1-201ENST00000455940 1363 ntBASIC6.66□□□□□ -1.34
HOXA9P31269 AC010624.4-201ENST00000597606 1351 ntBASIC6.66□□□□□ -1.34
HOXA9P31269 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC6.66□□□□□ -1.34
HOXA9P31269 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
HOXA9P31269 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
HOXA9P31269 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
HOXA9P31269 ZNF333-203ENST00000540689 3595 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
HOXA9P31269 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
HOXA9P31269 TATDN2P3-201ENST00000452855 3665 ntBASIC6.65□□□□□ -1.34
HOXA9P31269 CASC19-238ENST00000641523 1558 ntBASIC6.65□□□□□ -1.34
HOXA9P31269 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
HOXA9P31269 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
HOXA9P31269 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
HOXA9P31269 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC6.65□□□□□ -1.34
HOXA9P31269 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC6.65□□□□□ -1.34
HOXA9P31269 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.34
HOXA9P31269 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
HOXA9P31269 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC6.65□□□□□ -1.34
HOXA9P31269 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.34
HOXA9P31269 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
HOXA9P31269 SLC20A1P1-201ENST00000413906 956 ntBASIC6.65□□□□□ -1.34
HOXA9P31269 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC6.65□□□□□ -1.34
HOXA9P31269 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC6.65□□□□□ -1.34
HOXA9P31269 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.34
HOXA9P31269 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
HOXA9P31269 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC6.65□□□□□ -1.34
HOXA9P31269 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC6.65□□□□□ -1.34
HOXA9P31269 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC6.65□□□□□ -1.34
HOXA9P31269 AC106800.3-201ENST00000511389 308 ntBASIC6.65□□□□□ -1.34
HOXA9P31269 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC6.65□□□□□ -1.34
HOXA9P31269 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC6.65□□□□□ -1.34
HOXA9P31269 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC6.65□□□□□ -1.34
HOXA9P31269 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
HOXA9P31269 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC6.65□□□□□ -1.34
HOXA9P31269 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC6.65□□□□□ -1.34
HOXA9P31269 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC6.65□□□□□ -1.34
HOXA9P31269 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC6.65□□□□□ -1.34
HOXA9P31269 AC005899.5-201ENST00000584721 552 ntTSL 5 BASIC6.65□□□□□ -1.34
HOXA9P31269 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC6.65□□□□□ -1.34
HOXA9P31269 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC6.65□□□□□ -1.34
HOXA9P31269 AC010998.3-201ENST00000613871 631 ntBASIC6.65□□□□□ -1.34
HOXA9P31269 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC6.65□□□□□ -1.34
HOXA9P31269 MRPL57P1-201ENST00000621486 265 ntBASIC6.65□□□□□ -1.34
HOXA9P31269 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC6.65□□□□□ -1.34
HOXA9P31269 AC129915.3-201ENST00000634128 948 ntBASIC6.65□□□□□ -1.34
HOXA9P31269 MIR4302-201ENST00000638058 60 ntBASIC6.65□□□□□ -1.34
HOXA9P31269 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.34
HOXA9P31269 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC6.65□□□□□ -1.34
HOXA9P31269 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
HOXA9P31269 EIF3EP1-201ENST00000433978 1316 ntBASIC6.65□□□□□ -1.35
HOXA9P31269 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC6.65□□□□□ -1.35
HOXA9P31269 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.35
HOXA9P31269 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC6.65□□□□□ -1.35
HOXA9P31269 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC6.65□□□□□ -1.35
HOXA9P31269 AL358394.2-201ENST00000427229 3637 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
HOXA9P31269 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC6.65□□□□□ -1.35
HOXA9P31269 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.65□□□□□ -1.35
HOXA9P31269 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
HOXA9P31269 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
HOXA9P31269 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
HOXA9P31269 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
HOXA9P31269 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
HOXA9P31269 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
HOXA9P31269 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.64□□□□□ -1.35
HOXA9P31269 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
HOXA9P31269 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC6.64□□□□□ -1.35
HOXA9P31269 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
HOXA9P31269 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
HOXA9P31269 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
HOXA9P31269 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
HOXA9P31269 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC6.64□□□□□ -1.35
HOXA9P31269 RN7SKP78-201ENST00000364711 318 ntBASIC6.64□□□□□ -1.35
HOXA9P31269 SUGT1P2-201ENST00000379452 992 ntBASIC6.64□□□□□ -1.35
HOXA9P31269 MIR130B-202ENST00000385018 82 ntBASIC6.64□□□□□ -1.35
HOXA9P31269 RN7SKP121-201ENST00000410842 305 ntBASIC6.64□□□□□ -1.35
HOXA9P31269 RPL36P18-201ENST00000419316 318 ntBASIC6.64□□□□□ -1.35
HOXA9P31269 AC104843.2-201ENST00000427666 297 ntBASIC6.64□□□□□ -1.35
HOXA9P31269 PPIAP20-201ENST00000449839 135 ntBASIC6.64□□□□□ -1.35
HOXA9P31269 CFL1P4-201ENST00000451536 498 ntBASIC6.64□□□□□ -1.35
HOXA9P31269 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC6.64□□□□□ -1.35
HOXA9P31269 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC6.64□□□□□ -1.35
HOXA9P31269 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC6.64□□□□□ -1.35
HOXA9P31269 AC091965.3-201ENST00000506236 208 ntBASIC6.64□□□□□ -1.35
HOXA9P31269 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC6.64□□□□□ -1.35
HOXA9P31269 AC090958.1-201ENST00000511122 351 ntBASIC6.64□□□□□ -1.35
HOXA9P31269 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC6.64□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms