Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 USPL1-201ENST00000255304 3814 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL6A1P12109 TMC5-208ENST00000564959 2434 ntTSL 2 BASIC7.48□□□□□ -1.21
COL6A1P12109 Z99129.4-201ENST00000624649 2435 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 ZNF587B-201ENST00000442832 3339 ntTSL 2 BASIC7.48□□□□□ -1.21
COL6A1P12109 SLA-201ENST00000338087 3451 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL6A1P12109 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL6A1P12109 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL6A1P12109 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
COL6A1P12109 PRKAA1-201ENST00000296800 1134 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL6A1P12109 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL6A1P12109 RN7SKP81-201ENST00000365603 331 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 AC003045.1-201ENST00000398779 713 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC7.48□□□□□ -1.21
COL6A1P12109 HMGN1P20-201ENST00000411849 300 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC7.48□□□□□ -1.21
COL6A1P12109 CDY17P-201ENST00000414121 1282 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 SSR1P2-201ENST00000415208 787 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 AC114973.1-201ENST00000429057 632 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 GTF3AP6-201ENST00000432585 986 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 GAPDHP33-201ENST00000443168 1013 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 OR2L9P-201ENST00000444456 913 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC7.48□□□□□ -1.21
COL6A1P12109 HMGN1P8-201ENST00000463578 288 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 TRBV8-1-201ENST00000481590 279 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL6A1P12109 RPL7AP23-201ENST00000482625 776 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC7.48□□□□□ -1.21
COL6A1P12109 RPS3AP6-201ENST00000484430 795 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 AC092902.1-201ENST00000486999 259 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 AC018645.1-201ENST00000505003 109 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 AC108103.1-201ENST00000511286 446 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC7.48□□□□□ -1.21
COL6A1P12109 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC7.48□□□□□ -1.21
COL6A1P12109 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC7.48□□□□□ -1.21
COL6A1P12109 RPL3P13-201ENST00000550415 216 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC7.48□□□□□ -1.21
COL6A1P12109 AC023827.2-201ENST00000566880 1061 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL6A1P12109 AC011591.1-201ENST00000591379 518 ntTSL 2 BASIC7.48□□□□□ -1.21
COL6A1P12109 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC7.48□□□□□ -1.21
COL6A1P12109 AC008555.7-201ENST00000605008 583 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 SNORA35B-201ENST00000607417 129 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 AC093635.1-201ENST00000609028 555 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 AL356752.1-201ENST00000615844 593 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 CD163-203ENST00000432237 3701 ntAPPRIS ALT2 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL6A1P12109 LINC00536-201ENST00000505156 2692 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL6A1P12109 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL6A1P12109 ZNF841-202ENST00000426391 3620 ntTSL 2 BASIC7.48□□□□□ -1.21
COL6A1P12109 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL6A1P12109 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC7.48□□□□□ -1.21
COL6A1P12109 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL6A1P12109 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL6A1P12109 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL6A1P12109 DUBR-202ENST00000466734 2737 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL6A1P12109 CIR1P2-201ENST00000514821 1342 ntBASIC7.48□□□□□ -1.21
COL6A1P12109 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL6A1P12109 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL6A1P12109 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC7.48□□□□□ -1.21
COL6A1P12109 STK4-202ENST00000372806 6342 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL6A1P12109 MAPK10-392ENST00000642103 3126 ntAPPRIS P2 BASIC7.47□□□□□ -1.21
COL6A1P12109 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL6A1P12109 MTCO1P11-201ENST00000429111 1528 ntBASIC7.47□□□□□ -1.21
COL6A1P12109 CAST-228ENST00000509903 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL6A1P12109 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL6A1P12109 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL6A1P12109 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL6A1P12109 PIGN-233ENST00000639342 4305 ntTSL 5 BASIC7.47□□□□□ -1.21
COL6A1P12109 ARPP21-220ENST00000441454 2880 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL6A1P12109 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC7.47□□□□□ -1.21
COL6A1P12109 AKAP17BP-201ENST00000431706 2719 ntBASIC7.47□□□□□ -1.21
COL6A1P12109 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC7.47□□□□□ -1.21
COL6A1P12109 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL6A1P12109 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL6A1P12109 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC7.47□□□□□ -1.21
COL6A1P12109 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL6A1P12109 RIPOR2-207ENST00000540914 3614 ntTSL 2 BASIC7.47□□□□□ -1.21
COL6A1P12109 CATSPER2-202ENST00000381761 1758 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL6A1P12109 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL6A1P12109 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL6A1P12109 RPL12P13-201ENST00000310055 497 ntBASIC7.47□□□□□ -1.21
COL6A1P12109 COX6B1P3-201ENST00000312310 260 ntBASIC7.47□□□□□ -1.21
COL6A1P12109 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC7.47□□□□□ -1.21
COL6A1P12109 RNU4-40P-201ENST00000364351 143 ntBASIC7.47□□□□□ -1.21
COL6A1P12109 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC7.47□□□□□ -1.21
COL6A1P12109 RNU6-891P-201ENST00000384280 111 ntBASIC7.47□□□□□ -1.21
COL6A1P12109 AL031985.1-201ENST00000392713 418 ntBASIC7.47□□□□□ -1.21
COL6A1P12109 RPL12P12-201ENST00000424633 501 ntBASIC7.47□□□□□ -1.21
COL6A1P12109 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC7.47□□□□□ -1.21
COL6A1P12109 CETN4P-201ENST00000432407 469 ntBASIC7.47□□□□□ -1.21
COL6A1P12109 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC7.47□□□□□ -1.21
COL6A1P12109 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC7.47□□□□□ -1.21
COL6A1P12109 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC7.47□□□□□ -1.21
COL6A1P12109 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL6A1P12109 PIK3CB-208ENST00000477593 4658 ntAPPRIS P1 TSL 5 BASIC7.47□□□□□ -1.21
COL6A1P12109 AC096743.1-201ENST00000485172 319 ntBASIC7.47□□□□□ -1.21
COL6A1P12109 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC7.47□□□□□ -1.21
COL6A1P12109 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC7.47□□□□□ -1.21
COL6A1P12109 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC7.47□□□□□ -1.21
COL6A1P12109 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC7.47□□□□□ -1.21
COL6A1P12109 OR4A13P-201ENST00000529316 942 ntBASIC7.47□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms