Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 RN7SL475P-201ENST00000583379 298 ntBASIC6.1□□□□□ -1.43
CLDN9O95484 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC6.1□□□□□ -1.43
CLDN9O95484 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC6.1□□□□□ -1.43
CLDN9O95484 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC6.1□□□□□ -1.43
CLDN9O95484 AC005332.4-201ENST00000592752 579 ntBASIC6.1□□□□□ -1.43
CLDN9O95484 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC6.1□□□□□ -1.43
CLDN9O95484 U91328.4-201ENST00000608919 517 ntBASIC6.1□□□□□ -1.43
CLDN9O95484 AL008582.1-201ENST00000609612 442 ntBASIC6.1□□□□□ -1.43
CLDN9O95484 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC6.1□□□□□ -1.43
CLDN9O95484 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.1□□□□□ -1.43
CLDN9O95484 AC018659.2-201ENST00000624690 715 ntBASIC6.1□□□□□ -1.43
CLDN9O95484 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CLDN9O95484 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CLDN9O95484 AL136984.1-201ENST00000607611 1893 ntBASIC6.1□□□□□ -1.43
CLDN9O95484 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CLDN9O95484 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
CLDN9O95484 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CLDN9O95484 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CLDN9O95484 USP9YP3-201ENST00000434481 1766 ntBASIC6.1□□□□□ -1.43
CLDN9O95484 HSPD1P8-201ENST00000400121 1658 ntBASIC6.1□□□□□ -1.43
CLDN9O95484 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.1□□□□□ -1.43
CLDN9O95484 CREM-203ENST00000344351 1625 ntTSL 2 BASIC6.1□□□□□ -1.43
CLDN9O95484 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
CLDN9O95484 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CLDN9O95484 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CLDN9O95484 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC6.09□□□□□ -1.43
CLDN9O95484 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
CLDN9O95484 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CLDN9O95484 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC6.09□□□□□ -1.43
CLDN9O95484 AL161901.1-201ENST00000624954 3425 ntBASIC6.09□□□□□ -1.43
CLDN9O95484 CCL1-201ENST00000225842 592 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CLDN9O95484 OCM2-201ENST00000257627 696 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CLDN9O95484 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC6.09□□□□□ -1.43
CLDN9O95484 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CLDN9O95484 SNORD94-201ENST00000386037 137 ntBASIC6.09□□□□□ -1.43
CLDN9O95484 SMARCE1P6-201ENST00000398372 1216 ntBASIC6.09□□□□□ -1.43
CLDN9O95484 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CLDN9O95484 UBTFL2-201ENST00000411859 1191 ntBASIC6.09□□□□□ -1.43
CLDN9O95484 GPN3P1-201ENST00000423883 535 ntBASIC6.09□□□□□ -1.43
CLDN9O95484 GTF3AP6-201ENST00000432585 986 ntBASIC6.09□□□□□ -1.43
CLDN9O95484 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC6.09□□□□□ -1.43
CLDN9O95484 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC6.09□□□□□ -1.43
CLDN9O95484 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC6.09□□□□□ -1.43
CLDN9O95484 WDR82P2-201ENST00000444540 928 ntBASIC6.09□□□□□ -1.43
CLDN9O95484 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC6.09□□□□□ -1.43
CLDN9O95484 RPS27AP3-201ENST00000453803 454 ntBASIC6.09□□□□□ -1.43
CLDN9O95484 RN7SL643P-201ENST00000471845 291 ntBASIC6.09□□□□□ -1.43
CLDN9O95484 AC022730.1-201ENST00000473114 568 ntBASIC6.09□□□□□ -1.43
CLDN9O95484 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CLDN9O95484 AC114324.2-202ENST00000503812 134 ntBASIC6.09□□□□□ -1.43
CLDN9O95484 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC6.09□□□□□ -1.43
CLDN9O95484 RNA5SP418-201ENST00000515951 117 ntBASIC6.09□□□□□ -1.43
CLDN9O95484 RN7SKP248-201ENST00000516278 305 ntBASIC6.09□□□□□ -1.43
CLDN9O95484 AC104248.1-201ENST00000522244 481 ntTSL 3 BASIC6.09□□□□□ -1.43
CLDN9O95484 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CLDN9O95484 AP001804.1-201ENST00000526868 919 ntBASIC6.09□□□□□ -1.43
CLDN9O95484 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC6.09□□□□□ -1.43
CLDN9O95484 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC6.09□□□□□ -1.43
CLDN9O95484 MIR4732-201ENST00000581873 76 ntBASIC6.09□□□□□ -1.43
CLDN9O95484 LINC01855-201ENST00000585520 396 ntTSL 3 BASIC6.09□□□□□ -1.43
CLDN9O95484 AL390877.1-201ENST00000605704 214 ntBASIC6.09□□□□□ -1.43
CLDN9O95484 LINC02112-203ENST00000606169 419 ntTSL 5 BASIC6.09□□□□□ -1.43
CLDN9O95484 SNORA74.4-201ENST00000607595 199 ntBASIC6.09□□□□□ -1.43
CLDN9O95484 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC6.09□□□□□ -1.43
CLDN9O95484 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CLDN9O95484 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
CLDN9O95484 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CLDN9O95484 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CLDN9O95484 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.09□□□□□ -1.43
CLDN9O95484 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC6.09□□□□□ -1.44
CLDN9O95484 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
CLDN9O95484 AL139039.3-201ENST00000413129 1475 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
CLDN9O95484 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.09□□□□□ -1.44
CLDN9O95484 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.44
CLDN9O95484 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
CLDN9O95484 CCAT2-201ENST00000630920 1752 ntBASIC6.08□□□□□ -1.44
CLDN9O95484 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.08□□□□□ -1.44
CLDN9O95484 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC6.08□□□□□ -1.44
CLDN9O95484 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC6.08□□□□□ -1.44
CLDN9O95484 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
CLDN9O95484 CCNT2P1-201ENST00000423082 1315 ntBASIC6.08□□□□□ -1.44
CLDN9O95484 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CLDN9O95484 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CLDN9O95484 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CLDN9O95484 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
CLDN9O95484 AC096921.2-201ENST00000561507 1916 ntBASIC6.08□□□□□ -1.44
CLDN9O95484 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC6.08□□□□□ -1.44
CLDN9O95484 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC6.08□□□□□ -1.44
CLDN9O95484 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC6.08□□□□□ -1.44
CLDN9O95484 RNA5SP85-201ENST00000365378 119 ntBASIC6.08□□□□□ -1.44
CLDN9O95484 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CLDN9O95484 ARSFP1-201ENST00000398758 477 ntBASIC6.08□□□□□ -1.44
CLDN9O95484 AL445238.1-204ENST00000400311 463 ntBASIC6.08□□□□□ -1.44
CLDN9O95484 VIM2P-201ENST00000402383 1294 ntBASIC6.08□□□□□ -1.44
CLDN9O95484 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC6.08□□□□□ -1.44
CLDN9O95484 MTND4LP17-201ENST00000414607 293 ntBASIC6.08□□□□□ -1.44
CLDN9O95484 AC007966.1-201ENST00000421998 1179 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CLDN9O95484 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC6.08□□□□□ -1.44
CLDN9O95484 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC6.08□□□□□ -1.44
CLDN9O95484 AKR1B10P1-201ENST00000425765 942 ntBASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms