RNA–Protein interactions for RNA: ENST00000225842.3

CCL1-201, Transcript of C-C motif chemokine ligand 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCL1, Length 592 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL1-201ENST00000225842 CHIC1Q5VXU3 224 aa24.16■■□□□ 1.46
CCL1-201ENST00000225842 AEBP2Q6ZN18 517 aaPredicted RBP23.93■■□□□ 1.42
CCL1-201ENST00000225842 PHF23Q9BUL5 403 aaPredicted RBP21.4■■□□□ 1.02
CCL1-201ENST00000225842 SENP3Q9H4L4 574 aaPredicted RBP20.08■□□□□ 0.81
CCL1-201ENST00000225842 PLPPR3Q6T4P5 718 aa20■□□□□ 0.79
CCL1-201ENST00000225842 ADRA2BP18089 450 aa18.82■□□□□ 0.6
CCL1-201ENST00000225842 PPP6R1Q9UPN7 881 aa18.62■□□□□ 0.57
CCL1-201ENST00000225842 FOXD1Q16676 465 aa18.59■□□□□ 0.57
CCL1-201ENST00000225842 KCNA4P22459 653 aa18.42■□□□□ 0.54
CCL1-201ENST00000225842 EHMT2Q96KQ7 1210 aa18.27■□□□□ 0.52
CCL1-201ENST00000225842 PPP4R3CPQ6ZMV5 832 aa17.78■□□□□ 0.44
CCL1-201ENST00000225842 PIAS4Q8N2W9 510 aaPredicted RBP17.77■□□□□ 0.44
CCL1-201ENST00000225842 SLC4A1APQ9BWU0 796 aaKnown RBP17.68■□□□□ 0.42
CCL1-201ENST00000225842 CSRNP3Q8WYN3 585 aa17.57■□□□□ 0.4
CCL1-201ENST00000225842 NCBP3Q53F19 620 aaKnown RBP17.52■□□□□ 0.4
CCL1-201ENST00000225842 NPM3O75607 178 aaKnown RBP17.32■□□□□ 0.36
CCL1-201ENST00000225842 CNKSR2Q8WXI2 1034 aa17.04■□□□□ 0.32
CCL1-201ENST00000225842 ZBTB22O15209 634 aa16.97■□□□□ 0.31
CCL1-201ENST00000225842 SCAF1Q9H7N4 1312 aaKnown RBP16.96■□□□□ 0.3
CCL1-201ENST00000225842 MSH5O43196 834 aa16.72■□□□□ 0.27
CCL1-201ENST00000225842 MAPK8IP2Q13387 824 aaPredicted RBP16.69■□□□□ 0.26
CCL1-201ENST00000225842 FOXD4L1Q9NU39 408 aa16.63■□□□□ 0.25
CCL1-201ENST00000225842 DNAJC5BQ9UF47 199 aa16.52■□□□□ 0.24
CCL1-201ENST00000225842 RNF216Q9NWF9 866 aaPredicted RBP16.48■□□□□ 0.23
CCL1-201ENST00000225842 NISCHQ9Y2I1 1504 aa16.45■□□□□ 0.22
CCL1-201ENST00000225842 DMRT2Q9Y5R5 561 aa16.18■□□□□ 0.18
CCL1-201ENST00000225842 HOXD11P31277 338 aaPredicted RBP16.17■□□□□ 0.18
CCL1-201ENST00000225842 SLC4A2P04920 1241 aa16.15■□□□□ 0.18
CCL1-201ENST00000225842 RTN4Q9NQC3 1192 aaKnown RBP16.02■□□□□ 0.16
CCL1-201ENST00000225842 MYCNP04198 464 aaPredicted RBP15.94■□□□□ 0.14
CCL1-201ENST00000225842 AMER1Q5JTC6 1135 aaPredicted RBP15.93■□□□□ 0.14
CCL1-201ENST00000225842 ATXN8OSP0DMR3 200 aa15.9■□□□□ 0.14
CCL1-201ENST00000225842 SLC24A1O60721 1099 aa15.88■□□□□ 0.13
CCL1-201ENST00000225842 FKBP8Q14318 412 aa15.86■□□□□ 0.13
CCL1-201ENST00000225842 ABCC9O60706 1549 aa15.78■□□□□ 0.12
CCL1-201ENST00000225842 DCAF8L1A6NGE4 600 aa15.55■□□□□ 0.08
CCL1-201ENST00000225842 ATF5Q9Y2D1 282 aaPredicted RBP15.55■□□□□ 0.08
CCL1-201ENST00000225842 POTEDQ86YR6 584 aa15.48■□□□□ 0.07
CCL1-201ENST00000225842 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.48■□□□□ 0.07
CCL1-201ENST00000225842 SAMD1Q6SPF0 538 aaPredicted RBP15.36■□□□□ 0.05
CCL1-201ENST00000225842 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.34■□□□□ 0.05
CCL1-201ENST00000225842 HNRNPUL2Q1KMD3 747 aaKnown RBP15.34■□□□□ 0.05
CCL1-201ENST00000225842 U3KPZ7 1027 aaPredicted RBP15.33■□□□□ 0.04
CCL1-201ENST00000225842 ZNF219Q9P2Y4 722 aaPredicted RBP15.13■□□□□ 0.01
CCL1-201ENST00000225842 SPDYE4A6NLX3 237 aa14.96□□□□□ -0.01
CCL1-201ENST00000225842 APLP2Q06481 763 aa14.96□□□□□ -0.01
CCL1-201ENST00000225842 FBXO3Q9UK99 471 aa14.96□□□□□ -0.01
CCL1-201ENST00000225842 CCDC180Q9P1Z9 1646 aa14.93□□□□□ -0.02
CCL1-201ENST00000225842 MKRN4PQ13434 485 aaPredicted RBP14.89□□□□□ -0.03
CCL1-201ENST00000225842 VASPP50552 380 aaPredicted RBP14.78□□□□□ -0.04
CCL1-201ENST00000225842 PROM2Q8N271 834 aa14.77□□□□□ -0.05
CCL1-201ENST00000225842 FBLN2P98095 1184 aa14.76□□□□□ -0.05
CCL1-201ENST00000225842 TRHP20396 242 aaPredicted RBP14.73□□□□□ -0.05
CCL1-201ENST00000225842 PLCB2Q00722 1185 aa14.71□□□□□ -0.05
CCL1-201ENST00000225842 DNAJC5Q9H3Z4 198 aa14.71□□□□□ -0.05
CCL1-201ENST00000225842 SPINK5Q9NQ38 1064 aaPredicted RBP14.68□□□□□ -0.06
CCL1-201ENST00000225842 PABPN1Q86U42 306 aaKnown RBP eCLIP14.67□□□□□ -0.06
CCL1-201ENST00000225842 DCAF8L2P0C7V8 631 aa14.66□□□□□ -0.06
CCL1-201ENST00000225842 POLA2Q14181 598 aa14.66□□□□□ -0.06
CCL1-201ENST00000225842 IFNLR1Q8IU57 520 aaPredicted RBP14.66□□□□□ -0.06
CCL1-201ENST00000225842 RB1CC1Q8TDY2 1594 aa14.64□□□□□ -0.07
CCL1-201ENST00000225842 CAPN15O75808 1086 aa14.57□□□□□ -0.08
CCL1-201ENST00000225842 HAP1P54257 671 aaPredicted RBP14.57□□□□□ -0.08
CCL1-201ENST00000225842 PKD2Q13563 968 aa14.51□□□□□ -0.09
CCL1-201ENST00000225842 RNF39Q9H2S5 420 aa14.45□□□□□ -0.1
CCL1-201ENST00000225842 ABCB7O75027 752 aa14.42□□□□□ -0.1
CCL1-201ENST00000225842 ZBTB12Q9Y330 459 aaPredicted RBP14.39□□□□□ -0.11
CCL1-201ENST00000225842 NACADO15069 1562 aa14.38□□□□□ -0.11
CCL1-201ENST00000225842 KLHL34Q8N239 644 aa14.36□□□□□ -0.11
CCL1-201ENST00000225842 SPOCK2Q92563 424 aa14.32□□□□□ -0.12
CCL1-201ENST00000225842 C1QBPQ07021 282 aaKnown RBP14.29□□□□□ -0.12
CCL1-201ENST00000225842 CECR2Q9BXF3 1484 aa14.29□□□□□ -0.12
CCL1-201ENST00000225842 ECM2O94769 699 aaPredicted RBP14.28□□□□□ -0.12
CCL1-201ENST00000225842 BCANQ96GW7 911 aa14.28□□□□□ -0.12
CCL1-201ENST00000225842 VSIG10Q8N0Z9 540 aa14.27□□□□□ -0.13
CCL1-201ENST00000225842 ZNF692Q9BU19 519 aaPredicted RBP14.24□□□□□ -0.13
CCL1-201ENST00000225842 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.22□□□□□ -0.13
CCL1-201ENST00000225842 BBXQ8WY36 941 aaPredicted RBP14.21□□□□□ -0.13
CCL1-201ENST00000225842 BICRAQ9NZM4 1560 aa14.21□□□□□ -0.14
CCL1-201ENST00000225842 NPM1P06748 294 aaKnown RBP eCLIP14.2□□□□□ -0.14
CCL1-201ENST00000225842 PRKCSHP14314 528 aaPredicted RBP14.19□□□□□ -0.14
CCL1-201ENST00000225842 PLCD3Q8N3E9 789 aa14.19□□□□□ -0.14
CCL1-201ENST00000225842 STAG3Q9UJ98 1225 aa14.19□□□□□ -0.14
CCL1-201ENST00000225842 PAXIP1Q6ZW49 1069 aaPredicted RBP14.18□□□□□ -0.14
CCL1-201ENST00000225842 CFAP44Q96MT7 982 aa14.16□□□□□ -0.14
CCL1-201ENST00000225842 OSCARQ8IYS5 282 aa14.15□□□□□ -0.14
CCL1-201ENST00000225842 CC2D2AQ9P2K1 1620 aa14.14□□□□□ -0.15
CCL1-201ENST00000225842 KDM2AQ9Y2K7 1162 aa14.13□□□□□ -0.15
CCL1-201ENST00000225842 RGL2O15211 777 aa14.12□□□□□ -0.15
CCL1-201ENST00000225842 UNC13AQ9UPW8 1703 aa14.12□□□□□ -0.15
CCL1-201ENST00000225842 MIER1Q8N108 512 aa14.11□□□□□ -0.15
CCL1-201ENST00000225842 TAOK2Q9UL54 1235 aa14.11□□□□□ -0.15
CCL1-201ENST00000225842 SPDYE2BA6NHP3 402 aa14.09□□□□□ -0.15
CCL1-201ENST00000225842 SPDYE6P0CI01 402 aa14.09□□□□□ -0.15
CCL1-201ENST00000225842 SPDYE2Q495Y8 402 aa14.09□□□□□ -0.15
CCL1-201ENST00000225842 SSUH2Q9Y2M2 353 aa14.09□□□□□ -0.15
CCL1-201ENST00000225842 DSG3P32926 999 aa14.07□□□□□ -0.16
CCL1-201ENST00000225842 CIZ1Q9ULV3 898 aaPredicted RBP14.01□□□□□ -0.17
CCL1-201ENST00000225842 SPRYD3Q8NCJ5 442 aa13.99□□□□□ -0.17
CCL1-201ENST00000225842 TSHZ2Q9NRE2 1034 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms