Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
USP3Q9Y6I4 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
USP3Q9Y6I4 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
USP3Q9Y6I4 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
USP3Q9Y6I4 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP3Q9Y6I4 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.76■□□□□ 0.91
USP3Q9Y6I4 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP3Q9Y6I4 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP3Q9Y6I4 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.76■□□□□ 0.91
USP3Q9Y6I4 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.76■□□□□ 0.91
USP3Q9Y6I4 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.76■□□□□ 0.91
USP3Q9Y6I4 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP3Q9Y6I4 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.76■□□□□ 0.91
USP3Q9Y6I4 AL691432.2-201ENST00000607222 2038 ntBASIC20.76■□□□□ 0.91
USP3Q9Y6I4 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
USP3Q9Y6I4 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.76■□□□□ 0.91
USP3Q9Y6I4 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
USP3Q9Y6I4 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.76■□□□□ 0.91
USP3Q9Y6I4 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.76■□□□□ 0.91
USP3Q9Y6I4 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 NBPF21P-201ENST00000425093 1451 ntBASIC20.75■□□□□ 0.91
USP3Q9Y6I4 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP3Q9Y6I4 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.74■□□□□ 0.91
USP3Q9Y6I4 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP3Q9Y6I4 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP3Q9Y6I4 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP3Q9Y6I4 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP3Q9Y6I4 SLC25A24-204ENST00000569674 2357 ntBASIC20.73■□□□□ 0.91
USP3Q9Y6I4 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP3Q9Y6I4 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
USP3Q9Y6I4 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP3Q9Y6I4 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.73■□□□□ 0.91
USP3Q9Y6I4 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP3Q9Y6I4 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.73■□□□□ 0.91
USP3Q9Y6I4 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.73■□□□□ 0.91
USP3Q9Y6I4 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.73■□□□□ 0.91
USP3Q9Y6I4 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.73■□□□□ 0.91
USP3Q9Y6I4 AP006294.2-201ENST00000641667 209 ntBASIC20.73■□□□□ 0.91
USP3Q9Y6I4 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP3Q9Y6I4 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP3Q9Y6I4 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP3Q9Y6I4 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP3Q9Y6I4 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP3Q9Y6I4 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
USP3Q9Y6I4 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP3Q9Y6I4 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP3Q9Y6I4 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP3Q9Y6I4 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.72■□□□□ 0.91
USP3Q9Y6I4 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.72■□□□□ 0.91
USP3Q9Y6I4 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms