Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
AP4E1Q9UPM8 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
AP4E1Q9UPM8 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
AP4E1Q9UPM8 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.56■□□□□ 0.88
AP4E1Q9UPM8 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
AP4E1Q9UPM8 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
AP4E1Q9UPM8 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
AP4E1Q9UPM8 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
AP4E1Q9UPM8 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.55■□□□□ 0.88
AP4E1Q9UPM8 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
AP4E1Q9UPM8 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.55■□□□□ 0.88
AP4E1Q9UPM8 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.55■□□□□ 0.88
AP4E1Q9UPM8 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
AP4E1Q9UPM8 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.55■□□□□ 0.88
AP4E1Q9UPM8 SOX15-203ENST00000570788 1093 ntBASIC20.55■□□□□ 0.88
AP4E1Q9UPM8 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
AP4E1Q9UPM8 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.55■□□□□ 0.88
AP4E1Q9UPM8 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
AP4E1Q9UPM8 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.55■□□□□ 0.88
AP4E1Q9UPM8 AC124283.5-201ENST00000624661 1809 ntBASIC20.55■□□□□ 0.88
AP4E1Q9UPM8 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.55■□□□□ 0.88
AP4E1Q9UPM8 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.55■□□□□ 0.88
AP4E1Q9UPM8 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
AP4E1Q9UPM8 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
AP4E1Q9UPM8 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
AP4E1Q9UPM8 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.54■□□□□ 0.88
AP4E1Q9UPM8 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
AP4E1Q9UPM8 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
AP4E1Q9UPM8 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.54■□□□□ 0.88
AP4E1Q9UPM8 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
AP4E1Q9UPM8 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
AP4E1Q9UPM8 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
AP4E1Q9UPM8 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.54■□□□□ 0.88
AP4E1Q9UPM8 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
AP4E1Q9UPM8 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
AP4E1Q9UPM8 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
AP4E1Q9UPM8 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.54■□□□□ 0.88
AP4E1Q9UPM8 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.54■□□□□ 0.88
AP4E1Q9UPM8 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 RPS2P52-201ENST00000469610 820 ntBASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 AC018553.1-201ENST00000616682 1458 ntBASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 AC116351.2-201ENST00000606540 1585 ntBASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
AP4E1Q9UPM8 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.52■□□□□ 0.88
AP4E1Q9UPM8 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
AP4E1Q9UPM8 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
AP4E1Q9UPM8 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 RNA5SP413-201ENST00000516373 109 ntBASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms