Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SIX4Q9UIU6 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
SIX4Q9UIU6 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SIX4Q9UIU6 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SIX4Q9UIU6 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SIX4Q9UIU6 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SIX4Q9UIU6 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SIX4Q9UIU6 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SIX4Q9UIU6 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21.23■□□□□ 0.99
SIX4Q9UIU6 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC21.23■□□□□ 0.99
SIX4Q9UIU6 TK2-204ENST00000525974 1178 ntTSL 2 BASIC21.23■□□□□ 0.99
SIX4Q9UIU6 AC110285.5-201ENST00000611501 352 ntBASIC21.23■□□□□ 0.99
SIX4Q9UIU6 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC21.23■□□□□ 0.99
SIX4Q9UIU6 FAM197Y4-202ENST00000622692 608 ntBASIC21.23■□□□□ 0.99
SIX4Q9UIU6 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SIX4Q9UIU6 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.23■□□□□ 0.99
SIX4Q9UIU6 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SIX4Q9UIU6 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
SIX4Q9UIU6 AP001271.2-201ENST00000624018 1556 ntBASIC21.23■□□□□ 0.99
SIX4Q9UIU6 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 AC009237.14-201ENST00000609975 1594 ntBASIC21.22■□□□□ 0.99
SIX4Q9UIU6 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SIX4Q9UIU6 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 SPIB-206ENST00000596074 847 ntTSL 2 BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 AC066615.1-201ENST00000640911 628 ntBASIC21.21■□□□□ 0.99
SIX4Q9UIU6 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC21.21■□□□□ 0.99
SIX4Q9UIU6 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
SIX4Q9UIU6 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
SIX4Q9UIU6 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.99
SIX4Q9UIU6 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
SIX4Q9UIU6 AP006587.1-201ENST00000534129 1502 ntBASIC21.2■□□□□ 0.98
SIX4Q9UIU6 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.2■□□□□ 0.98
SIX4Q9UIU6 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21.2■□□□□ 0.98
SIX4Q9UIU6 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
SIX4Q9UIU6 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX4Q9UIU6 UBE2SP1-201ENST00000450587 669 ntBASIC21.2■□□□□ 0.98
SIX4Q9UIU6 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.2■□□□□ 0.98
SIX4Q9UIU6 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SIX4Q9UIU6 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC21.2■□□□□ 0.98
SIX4Q9UIU6 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC21.2■□□□□ 0.98
SIX4Q9UIU6 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.2■□□□□ 0.98
SIX4Q9UIU6 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SIX4Q9UIU6 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX4Q9UIU6 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX4Q9UIU6 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC21.2■□□□□ 0.98
SIX4Q9UIU6 LBX2-AS1-202ENST00000603175 2083 ntBASIC21.2■□□□□ 0.98
SIX4Q9UIU6 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
SIX4Q9UIU6 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX4Q9UIU6 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.2■□□□□ 0.98
SIX4Q9UIU6 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.2■□□□□ 0.98
SIX4Q9UIU6 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms