Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.89■□□□□ 0.77
DKK3Q9UBP4 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.77
DKK3Q9UBP4 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.89■□□□□ 0.77
DKK3Q9UBP4 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.89■□□□□ 0.77
DKK3Q9UBP4 RARRES2P10-201ENST00000564312 460 ntBASIC19.89■□□□□ 0.77
DKK3Q9UBP4 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.89■□□□□ 0.77
DKK3Q9UBP4 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.89■□□□□ 0.77
DKK3Q9UBP4 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
DKK3Q9UBP4 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
DKK3Q9UBP4 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.88■□□□□ 0.77
DKK3Q9UBP4 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
DKK3Q9UBP4 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
DKK3Q9UBP4 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.88■□□□□ 0.77
DKK3Q9UBP4 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
DKK3Q9UBP4 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
DKK3Q9UBP4 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
DKK3Q9UBP4 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
DKK3Q9UBP4 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
DKK3Q9UBP4 RPS2P4-201ENST00000476944 856 ntBASIC19.88■□□□□ 0.77
DKK3Q9UBP4 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.88■□□□□ 0.77
DKK3Q9UBP4 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.88■□□□□ 0.77
DKK3Q9UBP4 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.88■□□□□ 0.77
DKK3Q9UBP4 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.88■□□□□ 0.77
DKK3Q9UBP4 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.88■□□□□ 0.77
DKK3Q9UBP4 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
DKK3Q9UBP4 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 AL135905.2-201ENST00000584934 1404 ntBASIC19.87■□□□□ 0.77
DKK3Q9UBP4 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 AC012618.2-201ENST00000428058 849 ntBASIC19.87■□□□□ 0.77
DKK3Q9UBP4 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 AC004264.1-201ENST00000608354 794 ntBASIC19.87■□□□□ 0.77
DKK3Q9UBP4 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
DKK3Q9UBP4 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 AP006587.1-201ENST00000534129 1502 ntBASIC19.86■□□□□ 0.77
DKK3Q9UBP4 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
DKK3Q9UBP4 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.85■□□□□ 0.77
DKK3Q9UBP4 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.85■□□□□ 0.77
DKK3Q9UBP4 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.85■□□□□ 0.77
DKK3Q9UBP4 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
DKK3Q9UBP4 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
DKK3Q9UBP4 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.85■□□□□ 0.77
DKK3Q9UBP4 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
DKK3Q9UBP4 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
DKK3Q9UBP4 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
DKK3Q9UBP4 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.85■□□□□ 0.77
DKK3Q9UBP4 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
DKK3Q9UBP4 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.85■□□□□ 0.77
DKK3Q9UBP4 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.85■□□□□ 0.77
DKK3Q9UBP4 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.85■□□□□ 0.77
DKK3Q9UBP4 AC233702.5-201ENST00000584107 538 ntBASIC19.85■□□□□ 0.77
DKK3Q9UBP4 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms