Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.78■□□□□ 0.76
TREX1Q9NSU2 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
TREX1Q9NSU2 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.78■□□□□ 0.76
TREX1Q9NSU2 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
TREX1Q9NSU2 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
TREX1Q9NSU2 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
TREX1Q9NSU2 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
TREX1Q9NSU2 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.77■□□□□ 0.76
TREX1Q9NSU2 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TREX1Q9NSU2 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TREX1Q9NSU2 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TREX1Q9NSU2 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TREX1Q9NSU2 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.77■□□□□ 0.76
TREX1Q9NSU2 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TREX1Q9NSU2 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.77■□□□□ 0.76
TREX1Q9NSU2 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.77■□□□□ 0.76
TREX1Q9NSU2 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.77■□□□□ 0.76
TREX1Q9NSU2 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.77■□□□□ 0.76
TREX1Q9NSU2 AC097658.1-201ENST00000475555 843 ntBASIC19.77■□□□□ 0.76
TREX1Q9NSU2 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TREX1Q9NSU2 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.77■□□□□ 0.76
TREX1Q9NSU2 AC083880.1-201ENST00000608266 535 ntBASIC19.77■□□□□ 0.76
TREX1Q9NSU2 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
TREX1Q9NSU2 AL109923.1-201ENST00000618799 583 ntBASIC19.77■□□□□ 0.76
TREX1Q9NSU2 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
TREX1Q9NSU2 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.77■□□□□ 0.75
TREX1Q9NSU2 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 AC090192.1-201ENST00000517740 490 ntBASIC19.76■□□□□ 0.75
TREX1Q9NSU2 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 HLA-B-256ENST00000639848 1089 ntBASIC19.76■□□□□ 0.75
TREX1Q9NSU2 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TREX1Q9NSU2 AC093484.2-201ENST00000580996 2166 ntBASIC19.76■□□□□ 0.75
TREX1Q9NSU2 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.75■□□□□ 0.75
TREX1Q9NSU2 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.75■□□□□ 0.75
TREX1Q9NSU2 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.75■□□□□ 0.75
TREX1Q9NSU2 TFP1-202ENST00000475455 1573 ntBASIC19.75■□□□□ 0.75
TREX1Q9NSU2 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TREX1Q9NSU2 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TREX1Q9NSU2 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TREX1Q9NSU2 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TREX1Q9NSU2 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TREX1Q9NSU2 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TREX1Q9NSU2 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.75■□□□□ 0.75
TREX1Q9NSU2 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.75■□□□□ 0.75
TREX1Q9NSU2 AC142086.2-201ENST00000569753 217 ntBASIC19.75■□□□□ 0.75
TREX1Q9NSU2 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
TREX1Q9NSU2 AC104771.1-201ENST00000603335 964 ntBASIC19.75■□□□□ 0.75
TREX1Q9NSU2 AC006557.6-201ENST00000623071 864 ntBASIC19.75■□□□□ 0.75
TREX1Q9NSU2 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TREX1Q9NSU2 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
TREX1Q9NSU2 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
TREX1Q9NSU2 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.75■□□□□ 0.75
TREX1Q9NSU2 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
TREX1Q9NSU2 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TREX1Q9NSU2 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TREX1Q9NSU2 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
TREX1Q9NSU2 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
TREX1Q9NSU2 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.73■□□□□ 0.75
TREX1Q9NSU2 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.73■□□□□ 0.75
TREX1Q9NSU2 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
TREX1Q9NSU2 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.73■□□□□ 0.75
TREX1Q9NSU2 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms