Protein–RNA interactions for Protein: Q9NRR8

CDC42SE1, CDC42 small effector protein 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1Q9NRR8 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 LINC01465-201ENST00000408887 1940 ntBASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 POLI-202ENST00000406285 2030 ntTSL 2 BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CDC42SE1Q9NRR8 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.77
CDC42SE1Q9NRR8 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.78
CDC42SE1Q9NRR8 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CDC42SE1Q9NRR8 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CDC42SE1Q9NRR8 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CDC42SE1Q9NRR8 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CDC42SE1Q9NRR8 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC10.2□□□□□ -0.78
CDC42SE1Q9NRR8 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
CDC42SE1Q9NRR8 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CDC42SE1Q9NRR8 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CDC42SE1Q9NRR8 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CDC42SE1Q9NRR8 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CDC42SE1Q9NRR8 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CDC42SE1Q9NRR8 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CDC42SE1Q9NRR8 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CDC42SE1Q9NRR8 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CDC42SE1Q9NRR8 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CDC42SE1Q9NRR8 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CDC42SE1Q9NRR8 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC10.2□□□□□ -0.78
CDC42SE1Q9NRR8 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms