Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC18.63■□□□□ 0.57
NR1H4Q96RI1 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
NR1H4Q96RI1 AC055733.4-201ENST00000638462 1354 ntBASIC18.63■□□□□ 0.57
NR1H4Q96RI1 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NR1H4Q96RI1 AC106820.2-201ENST00000563775 3264 ntBASIC18.63■□□□□ 0.57
NR1H4Q96RI1 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NR1H4Q96RI1 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.63■□□□□ 0.57
NR1H4Q96RI1 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NR1H4Q96RI1 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
NR1H4Q96RI1 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NR1H4Q96RI1 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 MKRN4P-201ENST00000444706 1521 ntBASIC18.62■□□□□ 0.57
NR1H4Q96RI1 AC133637.1-201ENST00000624115 1537 ntBASIC18.62■□□□□ 0.57
NR1H4Q96RI1 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NR1H4Q96RI1 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NR1H4Q96RI1 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NR1H4Q96RI1 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
NR1H4Q96RI1 AC139713.2-201ENST00000641328 2723 ntBASIC18.61■□□□□ 0.57
NR1H4Q96RI1 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NR1H4Q96RI1 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NR1H4Q96RI1 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.61■□□□□ 0.57
NR1H4Q96RI1 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
NR1H4Q96RI1 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.61■□□□□ 0.57
NR1H4Q96RI1 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NR1H4Q96RI1 BX119927.1-201ENST00000636596 1552 ntBASIC18.61■□□□□ 0.57
NR1H4Q96RI1 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NR1H4Q96RI1 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NR1H4Q96RI1 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.61■□□□□ 0.57
NR1H4Q96RI1 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC18.61■□□□□ 0.57
NR1H4Q96RI1 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC18.61■□□□□ 0.57
NR1H4Q96RI1 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.61■□□□□ 0.57
NR1H4Q96RI1 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NR1H4Q96RI1 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
NR1H4Q96RI1 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NR1H4Q96RI1 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 UNC93B8-201ENST00000511903 705 ntBASIC18.6■□□□□ 0.57
NR1H4Q96RI1 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
NR1H4Q96RI1 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NR1H4Q96RI1 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
NR1H4Q96RI1 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
NR1H4Q96RI1 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NR1H4Q96RI1 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NR1H4Q96RI1 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NR1H4Q96RI1 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NR1H4Q96RI1 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NR1H4Q96RI1 CREM-229ENST00000474362 1030 ntTSL 2 BASIC18.59■□□□□ 0.57
NR1H4Q96RI1 MIR6724-1-201ENST00000616420 92 ntBASIC18.59■□□□□ 0.57
NR1H4Q96RI1 MIR6724-2-201ENST00000616483 92 ntBASIC18.59■□□□□ 0.57
NR1H4Q96RI1 MIR6724-4-201ENST00000617390 92 ntBASIC18.59■□□□□ 0.57
NR1H4Q96RI1 MIR6724-3-201ENST00000622482 92 ntBASIC18.59■□□□□ 0.57
NR1H4Q96RI1 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.59■□□□□ 0.57
NR1H4Q96RI1 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.59■□□□□ 0.57
NR1H4Q96RI1 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.59■□□□□ 0.57
NR1H4Q96RI1 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
NR1H4Q96RI1 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.59■□□□□ 0.57
NR1H4Q96RI1 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
NR1H4Q96RI1 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NR1H4Q96RI1 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms