Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VMP1Q96GC9 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
VMP1Q96GC9 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VMP1Q96GC9 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VMP1Q96GC9 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
VMP1Q96GC9 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VMP1Q96GC9 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
VMP1Q96GC9 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.91■□□□□ 0.62
VMP1Q96GC9 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.91■□□□□ 0.62
VMP1Q96GC9 RNA5SP413-201ENST00000516373 109 ntBASIC18.91■□□□□ 0.62
VMP1Q96GC9 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.91■□□□□ 0.62
VMP1Q96GC9 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.91■□□□□ 0.62
VMP1Q96GC9 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VMP1Q96GC9 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
VMP1Q96GC9 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VMP1Q96GC9 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VMP1Q96GC9 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.91■□□□□ 0.62
VMP1Q96GC9 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
VMP1Q96GC9 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VMP1Q96GC9 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VMP1Q96GC9 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VMP1Q96GC9 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VMP1Q96GC9 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VMP1Q96GC9 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VMP1Q96GC9 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
VMP1Q96GC9 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VMP1Q96GC9 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VMP1Q96GC9 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VMP1Q96GC9 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.9■□□□□ 0.62
VMP1Q96GC9 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VMP1Q96GC9 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.9■□□□□ 0.62
VMP1Q96GC9 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.9■□□□□ 0.62
VMP1Q96GC9 C2orf69P4-201ENST00000565394 541 ntBASIC18.9■□□□□ 0.62
VMP1Q96GC9 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.9■□□□□ 0.62
VMP1Q96GC9 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VMP1Q96GC9 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.9■□□□□ 0.62
VMP1Q96GC9 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.9■□□□□ 0.62
VMP1Q96GC9 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.9■□□□□ 0.62
VMP1Q96GC9 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.9■□□□□ 0.62
VMP1Q96GC9 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.9■□□□□ 0.62
VMP1Q96GC9 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VMP1Q96GC9 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
VMP1Q96GC9 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VMP1Q96GC9 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VMP1Q96GC9 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VMP1Q96GC9 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
VMP1Q96GC9 HCG11-201ENST00000411553 5696 ntBASIC18.89■□□□□ 0.62
VMP1Q96GC9 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
VMP1Q96GC9 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VMP1Q96GC9 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.89■□□□□ 0.61
VMP1Q96GC9 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VMP1Q96GC9 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.89■□□□□ 0.61
VMP1Q96GC9 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VMP1Q96GC9 AC098818.2-201ENST00000564925 2320 ntBASIC18.89■□□□□ 0.61
VMP1Q96GC9 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.89■□□□□ 0.61
VMP1Q96GC9 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VMP1Q96GC9 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VMP1Q96GC9 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VMP1Q96GC9 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VMP1Q96GC9 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VMP1Q96GC9 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
VMP1Q96GC9 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.89■□□□□ 0.61
VMP1Q96GC9 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VMP1Q96GC9 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.89■□□□□ 0.61
VMP1Q96GC9 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.89■□□□□ 0.61
VMP1Q96GC9 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VMP1Q96GC9 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VMP1Q96GC9 KRT8P36-201ENST00000489121 1440 ntBASIC18.89■□□□□ 0.61
VMP1Q96GC9 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.89■□□□□ 0.61
VMP1Q96GC9 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VMP1Q96GC9 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.89■□□□□ 0.61
VMP1Q96GC9 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VMP1Q96GC9 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VMP1Q96GC9 AC006128.1-201ENST00000624704 1661 ntBASIC18.89■□□□□ 0.61
VMP1Q96GC9 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VMP1Q96GC9 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.88■□□□□ 0.61
VMP1Q96GC9 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VMP1Q96GC9 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.88■□□□□ 0.61
VMP1Q96GC9 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VMP1Q96GC9 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VMP1Q96GC9 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
VMP1Q96GC9 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VMP1Q96GC9 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.88■□□□□ 0.61
VMP1Q96GC9 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VMP1Q96GC9 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.88■□□□□ 0.61
VMP1Q96GC9 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.88■□□□□ 0.61
VMP1Q96GC9 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.88■□□□□ 0.61
VMP1Q96GC9 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.88■□□□□ 0.61
VMP1Q96GC9 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.88■□□□□ 0.61
VMP1Q96GC9 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.88■□□□□ 0.61
VMP1Q96GC9 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VMP1Q96GC9 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VMP1Q96GC9 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.88■□□□□ 0.61
VMP1Q96GC9 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
VMP1Q96GC9 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
VMP1Q96GC9 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VMP1Q96GC9 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VMP1Q96GC9 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.88■□□□□ 0.61
VMP1Q96GC9 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VMP1Q96GC9 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms