Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.06■□□□□ 0.64
CLIP3Q96DZ5 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLIP3Q96DZ5 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLIP3Q96DZ5 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLIP3Q96DZ5 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLIP3Q96DZ5 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 KRASP1-201ENST00000407852 552 ntBASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 AC124016.1-201ENST00000609552 612 ntBASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CLIP3Q96DZ5 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 HLA-G-202ENST00000376815 851 ntBASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 HLA-G-203ENST00000376818 1127 ntBASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLIP3Q96DZ5 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP3Q96DZ5 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.03■□□□□ 0.64
CLIP3Q96DZ5 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP3Q96DZ5 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP3Q96DZ5 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CLIP3Q96DZ5 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
CLIP3Q96DZ5 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.03■□□□□ 0.64
CLIP3Q96DZ5 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP3Q96DZ5 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP3Q96DZ5 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.03■□□□□ 0.64
CLIP3Q96DZ5 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.03■□□□□ 0.64
CLIP3Q96DZ5 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.03■□□□□ 0.64
CLIP3Q96DZ5 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CLIP3Q96DZ5 AC110285.5-201ENST00000611501 352 ntBASIC19.03■□□□□ 0.64
CLIP3Q96DZ5 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
CLIP3Q96DZ5 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.03■□□□□ 0.64
CLIP3Q96DZ5 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLIP3Q96DZ5 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms