Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AL645929.1-201ENST00000420084 975 ntBASIC20.28■□□□□ 0.84
TTC28Q96AY4 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.28■□□□□ 0.84
TTC28Q96AY4 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TTC28Q96AY4 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC20.28■□□□□ 0.84
TTC28Q96AY4 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.28■□□□□ 0.84
TTC28Q96AY4 AP001160.2-201ENST00000596071 487 ntBASIC20.28■□□□□ 0.84
TTC28Q96AY4 IL9RP2-201ENST00000423948 1312 ntBASIC20.27■□□□□ 0.84
TTC28Q96AY4 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TTC28Q96AY4 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC20.27■□□□□ 0.84
TTC28Q96AY4 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
TTC28Q96AY4 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TTC28Q96AY4 AC004980.1-204ENST00000429707 299 ntBASIC20.27■□□□□ 0.84
TTC28Q96AY4 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.27■□□□□ 0.84
TTC28Q96AY4 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.27■□□□□ 0.84
TTC28Q96AY4 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.27■□□□□ 0.84
TTC28Q96AY4 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.27■□□□□ 0.84
TTC28Q96AY4 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.27■□□□□ 0.83
TTC28Q96AY4 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
TTC28Q96AY4 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
TTC28Q96AY4 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.27■□□□□ 0.83
TTC28Q96AY4 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.27■□□□□ 0.83
TTC28Q96AY4 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.27■□□□□ 0.83
TTC28Q96AY4 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
TTC28Q96AY4 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.26■□□□□ 0.83
TTC28Q96AY4 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.26■□□□□ 0.83
TTC28Q96AY4 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TTC28Q96AY4 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.26■□□□□ 0.83
TTC28Q96AY4 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.26■□□□□ 0.83
TTC28Q96AY4 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.26■□□□□ 0.83
TTC28Q96AY4 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
TTC28Q96AY4 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
TTC28Q96AY4 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
TTC28Q96AY4 AL121912.1-201ENST00000603683 238 ntBASIC20.26■□□□□ 0.83
TTC28Q96AY4 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
TTC28Q96AY4 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TTC28Q96AY4 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.26■□□□□ 0.83
TTC28Q96AY4 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
TTC28Q96AY4 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.26■□□□□ 0.83
TTC28Q96AY4 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TTC28Q96AY4 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.26■□□□□ 0.83
TTC28Q96AY4 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TTC28Q96AY4 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.26■□□□□ 0.83
TTC28Q96AY4 AC112907.2-201ENST00000448639 330 ntBASIC20.26■□□□□ 0.83
TTC28Q96AY4 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.26■□□□□ 0.83
TTC28Q96AY4 AC011498.5-201ENST00000592027 486 ntBASIC20.26■□□□□ 0.83
TTC28Q96AY4 AL121672.3-201ENST00000608644 468 ntBASIC20.26■□□□□ 0.83
TTC28Q96AY4 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
TTC28Q96AY4 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TTC28Q96AY4 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.25■□□□□ 0.83
TTC28Q96AY4 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.25■□□□□ 0.83
TTC28Q96AY4 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.25■□□□□ 0.83
TTC28Q96AY4 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.25■□□□□ 0.83
TTC28Q96AY4 GGCT-205ENST00000409436 954 ntTSL 3 BASIC20.25■□□□□ 0.83
TTC28Q96AY4 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.25■□□□□ 0.83
TTC28Q96AY4 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
TTC28Q96AY4 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
TTC28Q96AY4 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.25■□□□□ 0.83
TTC28Q96AY4 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
TTC28Q96AY4 AC011298.2-201ENST00000617989 482 ntBASIC20.25■□□□□ 0.83
TTC28Q96AY4 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.25■□□□□ 0.83
TTC28Q96AY4 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TTC28Q96AY4 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
TTC28Q96AY4 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.25■□□□□ 0.83
TTC28Q96AY4 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
TTC28Q96AY4 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.25■□□□□ 0.83
TTC28Q96AY4 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
TTC28Q96AY4 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.25■□□□□ 0.83
TTC28Q96AY4 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TTC28Q96AY4 HLA-G-203ENST00000376818 1127 ntBASIC20.24■□□□□ 0.83
TTC28Q96AY4 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
TTC28Q96AY4 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.24■□□□□ 0.83
TTC28Q96AY4 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
TTC28Q96AY4 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.24■□□□□ 0.83
TTC28Q96AY4 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TTC28Q96AY4 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TTC28Q96AY4 NEK4P2-201ENST00000580004 1012 ntBASIC20.24■□□□□ 0.83
TTC28Q96AY4 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TTC28Q96AY4 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
TTC28Q96AY4 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
TTC28Q96AY4 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.23■□□□□ 0.83
TTC28Q96AY4 PTBP1P-201ENST00000554374 1601 ntBASIC20.23■□□□□ 0.83
TTC28Q96AY4 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.23■□□□□ 0.83
TTC28Q96AY4 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
TTC28Q96AY4 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TTC28Q96AY4 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TTC28Q96AY4 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TTC28Q96AY4 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TTC28Q96AY4 LINC01311-201ENST00000565162 1445 ntBASIC20.23■□□□□ 0.83
TTC28Q96AY4 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
TTC28Q96AY4 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.23■□□□□ 0.83
TTC28Q96AY4 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.23■□□□□ 0.83
TTC28Q96AY4 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TTC28Q96AY4 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TTC28Q96AY4 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TTC28Q96AY4 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TTC28Q96AY4 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.22■□□□□ 0.83
TTC28Q96AY4 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TTC28Q96AY4 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.22■□□□□ 0.83
TTC28Q96AY4 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TTC28Q96AY4 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms