Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SHROOM3Q8TF72 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHROOM3Q8TF72 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHROOM3Q8TF72 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHROOM3Q8TF72 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.22■□□□□ 0.83
SHROOM3Q8TF72 YBX1P10-201ENST00000444752 975 ntBASIC20.22■□□□□ 0.83
SHROOM3Q8TF72 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
SHROOM3Q8TF72 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHROOM3Q8TF72 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.22■□□□□ 0.83
SHROOM3Q8TF72 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHROOM3Q8TF72 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SHROOM3Q8TF72 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHROOM3Q8TF72 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHROOM3Q8TF72 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 UNC93B4-201ENST00000505679 747 ntBASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 HLA-B-256ENST00000639848 1089 ntBASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHROOM3Q8TF72 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.2■□□□□ 0.82
SHROOM3Q8TF72 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHROOM3Q8TF72 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
SHROOM3Q8TF72 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.2■□□□□ 0.82
SHROOM3Q8TF72 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
SHROOM3Q8TF72 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.2■□□□□ 0.82
SHROOM3Q8TF72 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHROOM3Q8TF72 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.2■□□□□ 0.82
SHROOM3Q8TF72 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.2■□□□□ 0.82
SHROOM3Q8TF72 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHROOM3Q8TF72 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.2■□□□□ 0.82
SHROOM3Q8TF72 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHROOM3Q8TF72 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHROOM3Q8TF72 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
SHROOM3Q8TF72 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.2■□□□□ 0.82
SHROOM3Q8TF72 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.2■□□□□ 0.82
SHROOM3Q8TF72 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHROOM3Q8TF72 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.2■□□□□ 0.82
SHROOM3Q8TF72 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.19■□□□□ 0.82
SHROOM3Q8TF72 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM3Q8TF72 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM3Q8TF72 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM3Q8TF72 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.18■□□□□ 0.82
SHROOM3Q8TF72 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.18■□□□□ 0.82
SHROOM3Q8TF72 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM3Q8TF72 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.18■□□□□ 0.82
SHROOM3Q8TF72 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
SHROOM3Q8TF72 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.18■□□□□ 0.82
SHROOM3Q8TF72 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM3Q8TF72 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.18■□□□□ 0.82
SHROOM3Q8TF72 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.18■□□□□ 0.82
SHROOM3Q8TF72 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.18■□□□□ 0.82
SHROOM3Q8TF72 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM3Q8TF72 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.18■□□□□ 0.82
SHROOM3Q8TF72 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.18■□□□□ 0.82
SHROOM3Q8TF72 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM3Q8TF72 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms