Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 AC004408.2-201ENST00000623613 2777 ntBASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 AC137761.2-201ENST00000561729 223 ntBASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 AC145350.3-201ENST00000569033 163 ntBASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.66■□□□□ 0.58
LRIF1Q5T3J3 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 AC023632.3-201ENST00000521633 145 ntBASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRIF1Q5T3J3 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
LRIF1Q5T3J3 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
LRIF1Q5T3J3 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.64■□□□□ 0.58
LRIF1Q5T3J3 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
LRIF1Q5T3J3 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
LRIF1Q5T3J3 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 MIR6821-201ENST00000617625 74 ntBASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
LRIF1Q5T3J3 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRIF1Q5T3J3 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms