Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC21.84■■□□□ 1.09
PEX3P56589 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PEX3P56589 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
PEX3P56589 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
PEX3P56589 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.84■■□□□ 1.09
PEX3P56589 PRKY-204ENST00000533551 1019 ntBASIC21.84■■□□□ 1.09
PEX3P56589 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
PEX3P56589 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
PEX3P56589 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.84■■□□□ 1.09
PEX3P56589 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PEX3P56589 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PEX3P56589 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.84■■□□□ 1.09
PEX3P56589 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
PEX3P56589 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.84■■□□□ 1.09
PEX3P56589 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
PEX3P56589 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PEX3P56589 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
PEX3P56589 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
PEX3P56589 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
PEX3P56589 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.83■■□□□ 1.09
PEX3P56589 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC21.83■■□□□ 1.09
PEX3P56589 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PEX3P56589 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
PEX3P56589 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
PEX3P56589 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
PEX3P56589 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
PEX3P56589 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
PEX3P56589 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PEX3P56589 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
PEX3P56589 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC21.83■■□□□ 1.09
PEX3P56589 RPPH1-201ENST00000516869 333 ntBASIC21.83■■□□□ 1.09
PEX3P56589 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.83■■□□□ 1.09
PEX3P56589 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.83■■□□□ 1.09
PEX3P56589 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.83■■□□□ 1.09
PEX3P56589 AC142381.4-202ENST00000563973 229 ntBASIC21.83■■□□□ 1.09
PEX3P56589 Six3os1_6.1-201ENST00000620790 196 ntBASIC21.83■■□□□ 1.09
PEX3P56589 AL359736.2-201ENST00000621992 437 ntBASIC21.83■■□□□ 1.09
PEX3P56589 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
PEX3P56589 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
PEX3P56589 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.83■■□□□ 1.08
PEX3P56589 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.83■■□□□ 1.08
PEX3P56589 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
PEX3P56589 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
PEX3P56589 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
PEX3P56589 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PEX3P56589 TFP1-202ENST00000475455 1573 ntBASIC21.82■■□□□ 1.08
PEX3P56589 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.82■■□□□ 1.08
PEX3P56589 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
PEX3P56589 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PEX3P56589 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PEX3P56589 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
PEX3P56589 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PEX3P56589 GOLGA2P11-201ENST00000562660 1621 ntBASIC21.82■■□□□ 1.08
PEX3P56589 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PEX3P56589 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC21.82■■□□□ 1.08
PEX3P56589 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.82■■□□□ 1.08
PEX3P56589 KRASP1-201ENST00000407852 552 ntBASIC21.82■■□□□ 1.08
PEX3P56589 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.82■■□□□ 1.08
PEX3P56589 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC21.82■■□□□ 1.08
PEX3P56589 GCSHP5-201ENST00000443090 522 ntBASIC21.82■■□□□ 1.08
PEX3P56589 AL158047.1-201ENST00000445918 881 ntBASIC21.82■■□□□ 1.08
PEX3P56589 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.82■■□□□ 1.08
PEX3P56589 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.82■■□□□ 1.08
PEX3P56589 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.82■■□□□ 1.08
PEX3P56589 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.82■■□□□ 1.08
PEX3P56589 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.82■■□□□ 1.08
PEX3P56589 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC21.82■■□□□ 1.08
PEX3P56589 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.82■■□□□ 1.08
PEX3P56589 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PEX3P56589 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PEX3P56589 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PEX3P56589 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
PEX3P56589 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.82■■□□□ 1.08
PEX3P56589 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
PEX3P56589 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PEX3P56589 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PEX3P56589 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PEX3P56589 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PEX3P56589 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PEX3P56589 AC239809.2-201ENST00000415381 517 ntBASIC21.81■■□□□ 1.08
PEX3P56589 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.81■■□□□ 1.08
PEX3P56589 RNF121-214ENST00000533380 870 ntTSL 3 BASIC21.81■■□□□ 1.08
PEX3P56589 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.81■■□□□ 1.08
PEX3P56589 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
PEX3P56589 AC124016.1-201ENST00000609552 612 ntBASIC21.81■■□□□ 1.08
PEX3P56589 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PEX3P56589 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PEX3P56589 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
PEX3P56589 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
PEX3P56589 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
PEX3P56589 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
PEX3P56589 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.8■■□□□ 1.08
PEX3P56589 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PEX3P56589 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PEX3P56589 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PEX3P56589 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
PEX3P56589 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.8■■□□□ 1.08
PEX3P56589 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PEX3P56589 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.8■■□□□ 1.08
PEX3P56589 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms