Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CX3CR1P49238 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CX3CR1P49238 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CX3CR1P49238 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.39■□□□□ 0.37
CX3CR1P49238 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CX3CR1P49238 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CX3CR1P49238 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
CX3CR1P49238 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CX3CR1P49238 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CX3CR1P49238 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CX3CR1P49238 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CX3CR1P49238 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CX3CR1P49238 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.38■□□□□ 0.37
CX3CR1P49238 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CX3CR1P49238 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CX3CR1P49238 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CX3CR1P49238 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CX3CR1P49238 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC17.38■□□□□ 0.37
CX3CR1P49238 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC17.38■□□□□ 0.37
CX3CR1P49238 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CX3CR1P49238 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CX3CR1P49238 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.38■□□□□ 0.37
CX3CR1P49238 C2orf69P4-201ENST00000565394 541 ntBASIC17.38■□□□□ 0.37
CX3CR1P49238 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC17.38■□□□□ 0.37
CX3CR1P49238 AL137784.2-201ENST00000607332 1000 ntBASIC17.38■□□□□ 0.37
CX3CR1P49238 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CX3CR1P49238 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CX3CR1P49238 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CX3CR1P49238 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CX3CR1P49238 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CX3CR1P49238 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CX3CR1P49238 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.37■□□□□ 0.37
CX3CR1P49238 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC17.37■□□□□ 0.37
CX3CR1P49238 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.37■□□□□ 0.37
CX3CR1P49238 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CX3CR1P49238 AL020996.1-203ENST00000536896 2307 ntBASIC17.37■□□□□ 0.37
CX3CR1P49238 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CX3CR1P49238 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CX3CR1P49238 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
CX3CR1P49238 MIR935-201ENST00000401179 91 ntBASIC17.37■□□□□ 0.37
CX3CR1P49238 LSM12P1-201ENST00000411836 588 ntBASIC17.37■□□□□ 0.37
CX3CR1P49238 GLI3-203ENST00000437480 451 ntTSL 2 BASIC17.37■□□□□ 0.37
CX3CR1P49238 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CX3CR1P49238 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC17.37■□□□□ 0.37
CX3CR1P49238 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CX3CR1P49238 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CX3CR1P49238 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CX3CR1P49238 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CX3CR1P49238 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CX3CR1P49238 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CX3CR1P49238 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CX3CR1P49238 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CX3CR1P49238 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CX3CR1P49238 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.36■□□□□ 0.37
CX3CR1P49238 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CX3CR1P49238 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CX3CR1P49238 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.36■□□□□ 0.37
CX3CR1P49238 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC17.36■□□□□ 0.37
CX3CR1P49238 AC133552.2-202ENST00000575694 574 ntBASIC17.36■□□□□ 0.37
CX3CR1P49238 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC17.36■□□□□ 0.37
CX3CR1P49238 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.36■□□□□ 0.37
CX3CR1P49238 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CX3CR1P49238 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CX3CR1P49238 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.36■□□□□ 0.37
CX3CR1P49238 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CX3CR1P49238 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CX3CR1P49238 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CX3CR1P49238 AC087289.5-201ENST00000586076 3175 ntBASIC17.36■□□□□ 0.37
CX3CR1P49238 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CR1P49238 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CR1P49238 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC17.35■□□□□ 0.37
CX3CR1P49238 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CR1P49238 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.35■□□□□ 0.37
CX3CR1P49238 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CR1P49238 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CR1P49238 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC17.35■□□□□ 0.37
CX3CR1P49238 MIR663A-201ENST00000385250 93 ntBASIC17.35■□□□□ 0.37
CX3CR1P49238 CDCA4P2-201ENST00000441182 718 ntBASIC17.35■□□□□ 0.37
CX3CR1P49238 PHB2-213ENST00000546111 858 ntTSL 2 BASIC17.35■□□□□ 0.37
CX3CR1P49238 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC17.35■□□□□ 0.37
CX3CR1P49238 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC17.35■□□□□ 0.37
CX3CR1P49238 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC17.35■□□□□ 0.37
CX3CR1P49238 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC17.35■□□□□ 0.37
CX3CR1P49238 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.35■□□□□ 0.37
CX3CR1P49238 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CX3CR1P49238 AC009237.14-201ENST00000609975 1594 ntBASIC17.35■□□□□ 0.37
CX3CR1P49238 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.35■□□□□ 0.37
CX3CR1P49238 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CR1P49238 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CR1P49238 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
CX3CR1P49238 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.35■□□□□ 0.37
CX3CR1P49238 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CR1P49238 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CX3CR1P49238 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CX3CR1P49238 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
CX3CR1P49238 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CX3CR1P49238 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CX3CR1P49238 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CX3CR1P49238 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.34■□□□□ 0.37
CX3CR1P49238 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms