Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
CIITAP33076 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CIITAP33076 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
CIITAP33076 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC22.36■■□□□ 1.17
CIITAP33076 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC22.36■■□□□ 1.17
CIITAP33076 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CIITAP33076 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
CIITAP33076 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
CIITAP33076 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CIITAP33076 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC22.36■■□□□ 1.17
CIITAP33076 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC22.36■■□□□ 1.17
CIITAP33076 AC066615.1-201ENST00000640911 628 ntBASIC22.36■■□□□ 1.17
CIITAP33076 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
CIITAP33076 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
CIITAP33076 AP006587.1-201ENST00000534129 1502 ntBASIC22.36■■□□□ 1.17
CIITAP33076 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC22.36■■□□□ 1.17
CIITAP33076 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC22.35■■□□□ 1.17
CIITAP33076 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
CIITAP33076 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
CIITAP33076 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
CIITAP33076 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC22.35■■□□□ 1.17
CIITAP33076 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
CIITAP33076 BAALC-201ENST00000297574 801 ntTSL 3 BASIC22.35■■□□□ 1.17
CIITAP33076 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
CIITAP33076 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
CIITAP33076 KRT16P5-201ENST00000455284 522 ntBASIC22.35■■□□□ 1.17
CIITAP33076 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CIITAP33076 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
CIITAP33076 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC22.35■■□□□ 1.17
CIITAP33076 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC22.35■■□□□ 1.17
CIITAP33076 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC22.35■■□□□ 1.17
CIITAP33076 SPIB-206ENST00000596074 847 ntTSL 2 BASIC22.35■■□□□ 1.17
CIITAP33076 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC22.35■■□□□ 1.17
CIITAP33076 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC22.35■■□□□ 1.17
CIITAP33076 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CIITAP33076 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC22.35■■□□□ 1.17
CIITAP33076 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CIITAP33076 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CIITAP33076 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC22.35■■□□□ 1.17
CIITAP33076 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
CIITAP33076 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC22.34■■□□□ 1.17
CIITAP33076 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
CIITAP33076 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC22.34■■□□□ 1.17
CIITAP33076 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC22.34■■□□□ 1.17
CIITAP33076 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CIITAP33076 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CIITAP33076 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC22.34■■□□□ 1.17
CIITAP33076 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
CIITAP33076 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC22.34■■□□□ 1.17
CIITAP33076 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CIITAP33076 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CIITAP33076 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC22.34■■□□□ 1.17
CIITAP33076 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC22.34■■□□□ 1.17
CIITAP33076 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC22.34■■□□□ 1.17
CIITAP33076 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CIITAP33076 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC22.34■■□□□ 1.17
CIITAP33076 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CIITAP33076 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CIITAP33076 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC22.34■■□□□ 1.17
CIITAP33076 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
CIITAP33076 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC22.33■■□□□ 1.17
CIITAP33076 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CIITAP33076 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CIITAP33076 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
CIITAP33076 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CIITAP33076 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
CIITAP33076 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CIITAP33076 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CIITAP33076 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC22.33■■□□□ 1.17
CIITAP33076 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CIITAP33076 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC22.33■■□□□ 1.17
CIITAP33076 YBX1P10-201ENST00000444752 975 ntBASIC22.33■■□□□ 1.17
CIITAP33076 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CIITAP33076 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CIITAP33076 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC22.33■■□□□ 1.17
CIITAP33076 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
CIITAP33076 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC22.33■■□□□ 1.17
CIITAP33076 USP36-216ENST00000589424 970 ntTSL 5 BASIC22.33■■□□□ 1.17
CIITAP33076 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC22.33■■□□□ 1.16
CIITAP33076 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.16
CIITAP33076 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
CIITAP33076 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
CIITAP33076 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CIITAP33076 MME-217ENST00000616757 1315 ntTSL 5 BASIC22.32■■□□□ 1.16
CIITAP33076 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
CIITAP33076 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC22.32■■□□□ 1.16
CIITAP33076 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CIITAP33076 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
CIITAP33076 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CIITAP33076 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CIITAP33076 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC22.32■■□□□ 1.16
CIITAP33076 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC22.32■■□□□ 1.16
CIITAP33076 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
CIITAP33076 TK2-204ENST00000525974 1178 ntTSL 2 BASIC22.32■■□□□ 1.16
CIITAP33076 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC22.32■■□□□ 1.16
CIITAP33076 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CIITAP33076 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
CIITAP33076 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
CIITAP33076 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CIITAP33076 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms