Protein–RNA interactions for Protein: P26640

VARS, Valine--tRNA ligase, humanhuman

Known RBP Predictions only

Length 1,264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VARSP26640 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.43■□□□□ 0.7
VARSP26640 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VARSP26640 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.43■□□□□ 0.7
VARSP26640 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VARSP26640 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.42■□□□□ 0.7
VARSP26640 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VARSP26640 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
VARSP26640 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VARSP26640 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.42■□□□□ 0.7
VARSP26640 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.42■□□□□ 0.7
VARSP26640 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.42■□□□□ 0.7
VARSP26640 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VARSP26640 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
VARSP26640 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
VARSP26640 LSM12P1-201ENST00000411836 588 ntBASIC19.42■□□□□ 0.7
VARSP26640 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.42■□□□□ 0.7
VARSP26640 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.42■□□□□ 0.7
VARSP26640 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VARSP26640 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VARSP26640 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
VARSP26640 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VARSP26640 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VARSP26640 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.41■□□□□ 0.7
VARSP26640 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VARSP26640 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
VARSP26640 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.41■□□□□ 0.7
VARSP26640 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
VARSP26640 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VARSP26640 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
VARSP26640 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VARSP26640 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VARSP26640 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.41■□□□□ 0.7
VARSP26640 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
VARSP26640 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
VARSP26640 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VARSP26640 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VARSP26640 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VARSP26640 RNA5SP413-201ENST00000516373 109 ntBASIC19.41■□□□□ 0.7
VARSP26640 AC008687.6-201ENST00000596318 630 ntBASIC19.41■□□□□ 0.7
VARSP26640 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VARSP26640 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.41■□□□□ 0.7
VARSP26640 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
VARSP26640 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VARSP26640 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VARSP26640 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VARSP26640 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
VARSP26640 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.41■□□□□ 0.7
VARSP26640 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VARSP26640 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VARSP26640 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.41■□□□□ 0.7
VARSP26640 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VARSP26640 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VARSP26640 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VARSP26640 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.4■□□□□ 0.7
VARSP26640 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VARSP26640 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VARSP26640 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VARSP26640 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VARSP26640 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.4■□□□□ 0.7
VARSP26640 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.4■□□□□ 0.7
VARSP26640 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.4■□□□□ 0.7
VARSP26640 AC092118.2-201ENST00000613495 667 ntBASIC19.4■□□□□ 0.7
VARSP26640 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VARSP26640 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VARSP26640 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
VARSP26640 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VARSP26640 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VARSP26640 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VARSP26640 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
VARSP26640 AL158211.5-201ENST00000623583 2518 ntBASIC19.4■□□□□ 0.7
VARSP26640 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VARSP26640 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VARSP26640 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.39■□□□□ 0.69
VARSP26640 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VARSP26640 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VARSP26640 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VARSP26640 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
VARSP26640 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VARSP26640 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
VARSP26640 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VARSP26640 MIPEPP3-201ENST00000412105 444 ntBASIC19.39■□□□□ 0.69
VARSP26640 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VARSP26640 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.39■□□□□ 0.69
VARSP26640 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.69
VARSP26640 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.39■□□□□ 0.69
VARSP26640 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.39■□□□□ 0.69
VARSP26640 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.39■□□□□ 0.69
VARSP26640 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.39■□□□□ 0.69
VARSP26640 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
VARSP26640 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VARSP26640 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.39■□□□□ 0.69
VARSP26640 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VARSP26640 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VARSP26640 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
VARSP26640 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VARSP26640 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VARSP26640 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.39■□□□□ 0.69
VARSP26640 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VARSP26640 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.39■□□□□ 0.69
VARSP26640 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms