Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.59■□□□□ 0.89
VCANP13611 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCANP13611 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCANP13611 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCANP13611 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC20.59■□□□□ 0.89
VCANP13611 AC011506.1-201ENST00000474329 610 ntBASIC20.59■□□□□ 0.89
VCANP13611 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.59■□□□□ 0.89
VCANP13611 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCANP13611 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCANP13611 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VCANP13611 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VCANP13611 AL356652.1-201ENST00000615962 565 ntBASIC20.59■□□□□ 0.89
VCANP13611 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC20.59■□□□□ 0.89
VCANP13611 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VCANP13611 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
VCANP13611 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VCANP13611 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.58■□□□□ 0.89
VCANP13611 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VCANP13611 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
VCANP13611 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
VCANP13611 SLC25A1P1-201ENST00000528351 927 ntBASIC20.58■□□□□ 0.89
VCANP13611 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.58■□□□□ 0.89
VCANP13611 AC010653.2-201ENST00000623505 997 ntBASIC20.58■□□□□ 0.89
VCANP13611 AC141257.4-201ENST00000634557 245 ntBASIC20.58■□□□□ 0.89
VCANP13611 AC136944.6-201ENST00000634818 245 ntBASIC20.58■□□□□ 0.89
VCANP13611 AF228730.7-201ENST00000641842 219 ntBASIC20.58■□□□□ 0.89
VCANP13611 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VCANP13611 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VCANP13611 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VCANP13611 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VCANP13611 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.58■□□□□ 0.88
VCANP13611 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.58■□□□□ 0.88
VCANP13611 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
VCANP13611 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.58■□□□□ 0.88
VCANP13611 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
VCANP13611 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
VCANP13611 AC116562.4-202ENST00000641738 218 ntBASIC20.58■□□□□ 0.88
VCANP13611 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.57■□□□□ 0.88
VCANP13611 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.57■□□□□ 0.88
VCANP13611 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VCANP13611 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VCANP13611 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VCANP13611 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
VCANP13611 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VCANP13611 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VCANP13611 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VCANP13611 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
VCANP13611 MRPL3P1-201ENST00000400109 1033 ntBASIC20.57■□□□□ 0.88
VCANP13611 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VCANP13611 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VCANP13611 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
VCANP13611 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VCANP13611 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.57■□□□□ 0.88
VCANP13611 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.57■□□□□ 0.88
VCANP13611 AC079781.3-201ENST00000449110 356 ntBASIC20.57■□□□□ 0.88
VCANP13611 AL512604.3-201ENST00000569583 964 ntBASIC20.57■□□□□ 0.88
VCANP13611 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.56■□□□□ 0.88
VCANP13611 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VCANP13611 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
VCANP13611 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.56■□□□□ 0.88
VCANP13611 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VCANP13611 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC20.56■□□□□ 0.88
VCANP13611 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.56■□□□□ 0.88
VCANP13611 AC079776.4-201ENST00000511039 504 ntBASIC20.56■□□□□ 0.88
VCANP13611 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VCANP13611 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
VCANP13611 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.56■□□□□ 0.88
VCANP13611 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VCANP13611 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VCANP13611 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.56■□□□□ 0.88
VCANP13611 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
VCANP13611 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VCANP13611 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
VCANP13611 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VCANP13611 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.55■□□□□ 0.88
VCANP13611 PMS2P2-201ENST00000425039 1128 ntBASIC20.55■□□□□ 0.88
VCANP13611 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
VCANP13611 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VCANP13611 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
VCANP13611 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.55■□□□□ 0.88
VCANP13611 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
VCANP13611 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
VCANP13611 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.55■□□□□ 0.88
VCANP13611 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VCANP13611 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VCANP13611 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VCANP13611 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VCANP13611 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VCANP13611 AL035633.1-201ENST00000406139 838 ntBASIC20.55■□□□□ 0.88
VCANP13611 AC008040.2-201ENST00000461049 708 ntBASIC20.55■□□□□ 0.88
VCANP13611 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.55■□□□□ 0.88
VCANP13611 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VCANP13611 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VCANP13611 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VCANP13611 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
VCANP13611 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
VCANP13611 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VCANP13611 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC20.55■□□□□ 0.88
VCANP13611 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.55■□□□□ 0.88
VCANP13611 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms