Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 DGCR10-201ENST00000609839 495 ntBASIC31.05■■■□□ 2.56
PCF11O94913 AC010947.1-201ENST00000623454 693 ntBASIC31.05■■■□□ 2.56
PCF11O94913 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
PCF11O94913 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC31.04■■■□□ 2.56
PCF11O94913 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC31.04■■■□□ 2.56
PCF11O94913 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC31.04■■■□□ 2.56
PCF11O94913 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
PCF11O94913 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC31.04■■■□□ 2.56
PCF11O94913 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
PCF11O94913 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
PCF11O94913 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
PCF11O94913 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
PCF11O94913 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
PCF11O94913 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC31.03■■■□□ 2.56
PCF11O94913 ME2-216ENST00000639850 2331 ntTSL 5 BASIC31.03■■■□□ 2.56
PCF11O94913 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
PCF11O94913 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
PCF11O94913 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC31.03■■■□□ 2.56
PCF11O94913 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
PCF11O94913 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
PCF11O94913 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
PCF11O94913 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC31.03■■■□□ 2.56
PCF11O94913 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC31.03■■■□□ 2.56
PCF11O94913 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC31.03■■■□□ 2.56
PCF11O94913 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC31.03■■■□□ 2.56
PCF11O94913 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
PCF11O94913 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC31.02■■■□□ 2.56
PCF11O94913 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC31.02■■■□□ 2.56
PCF11O94913 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
PCF11O94913 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC31.02■■■□□ 2.56
PCF11O94913 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC31.02■■■□□ 2.56
PCF11O94913 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
PCF11O94913 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
PCF11O94913 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC31.01■■■□□ 2.56
PCF11O94913 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC31.01■■■□□ 2.56
PCF11O94913 PRR31-201ENST00000371629 978 ntTSL 2 BASIC31.01■■■□□ 2.56
PCF11O94913 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
PCF11O94913 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC31.01■■■□□ 2.56
PCF11O94913 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
PCF11O94913 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
PCF11O94913 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC31.01■■■□□ 2.55
PCF11O94913 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC31.01■■■□□ 2.55
PCF11O94913 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC31.01■■■□□ 2.55
PCF11O94913 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC31.01■■■□□ 2.55
PCF11O94913 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
PCF11O94913 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
PCF11O94913 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
PCF11O94913 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC31■■■□□ 2.55
PCF11O94913 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
PCF11O94913 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC31■■■□□ 2.55
PCF11O94913 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC31■■■□□ 2.55
PCF11O94913 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC31■■■□□ 2.55
PCF11O94913 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC31■■■□□ 2.55
PCF11O94913 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC31■■■□□ 2.55
PCF11O94913 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
PCF11O94913 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC31■■■□□ 2.55
PCF11O94913 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC31■■■□□ 2.55
PCF11O94913 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC31■■■□□ 2.55
PCF11O94913 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC31■■■□□ 2.55
PCF11O94913 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC31■■■□□ 2.55
PCF11O94913 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC31■■■□□ 2.55
PCF11O94913 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC31■■■□□ 2.55
PCF11O94913 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC31■■■□□ 2.55
PCF11O94913 MOK-225ENST00000522867 1883 ntTSL 5 BASIC31■■■□□ 2.55
PCF11O94913 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
PCF11O94913 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC31■■■□□ 2.55
PCF11O94913 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC31■■■□□ 2.55
PCF11O94913 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC31■■■□□ 2.55
PCF11O94913 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC31■■■□□ 2.55
PCF11O94913 USF2-205ENST00000594064 1179 ntTSL 2 BASIC31■■■□□ 2.55
PCF11O94913 AL121894.2-201ENST00000602977 491 ntBASIC31■■■□□ 2.55
PCF11O94913 AL031985.4-201ENST00000642138 673 ntBASIC31■■■□□ 2.55
PCF11O94913 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC31■■■□□ 2.55
PCF11O94913 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC31■■■□□ 2.55
PCF11O94913 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC30.99■■■□□ 2.55
PCF11O94913 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
PCF11O94913 KRT18P57-201ENST00000443599 1254 ntBASIC30.99■■■□□ 2.55
PCF11O94913 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
PCF11O94913 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
PCF11O94913 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC30.99■■■□□ 2.55
PCF11O94913 HLA-A-209ENST00000638375 975 ntBASIC30.98■■■□□ 2.55
PCF11O94913 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC30.98■■■□□ 2.55
PCF11O94913 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
PCF11O94913 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
PCF11O94913 TERF1P1-201ENST00000311003 1181 ntBASIC30.97■■■□□ 2.55
PCF11O94913 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
PCF11O94913 TPM4P1-201ENST00000436100 807 ntBASIC30.97■■■□□ 2.55
PCF11O94913 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC30.97■■■□□ 2.55
PCF11O94913 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
PCF11O94913 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
PCF11O94913 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
PCF11O94913 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
PCF11O94913 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC30.97■■■□□ 2.55
PCF11O94913 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC30.97■■■□□ 2.55
PCF11O94913 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC30.97■■■□□ 2.55
PCF11O94913 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC30.97■■■□□ 2.55
PCF11O94913 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
PCF11O94913 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC30.96■■■□□ 2.55
PCF11O94913 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC30.96■■■□□ 2.55
PCF11O94913 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms