Protein–RNA interactions for Protein: O94782

USP1, Ubiquitin carboxyl-terminal hydrolase 1, humanhuman

Predictions only

Length 785 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP1O94782 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP1O94782 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
USP1O94782 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
USP1O94782 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP1O94782 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.02■□□□□ 0.79
USP1O94782 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
USP1O94782 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.79
USP1O94782 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
USP1O94782 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP1O94782 AC116562.4-201ENST00000641316 2276 ntBASIC20.01■□□□□ 0.79
USP1O94782 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP1O94782 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.01■□□□□ 0.79
USP1O94782 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP1O94782 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP1O94782 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP1O94782 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.01■□□□□ 0.79
USP1O94782 HLA-G-202ENST00000376815 851 ntBASIC20.01■□□□□ 0.79
USP1O94782 HLA-G-203ENST00000376818 1127 ntBASIC20.01■□□□□ 0.79
USP1O94782 AC093787.1-201ENST00000450396 207 ntBASIC20.01■□□□□ 0.79
USP1O94782 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.01■□□□□ 0.79
USP1O94782 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.01■□□□□ 0.79
USP1O94782 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.01■□□□□ 0.79
USP1O94782 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
USP1O94782 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.01■□□□□ 0.79
USP1O94782 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.01■□□□□ 0.79
USP1O94782 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP1O94782 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP1O94782 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP1O94782 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP1O94782 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP1O94782 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP1O94782 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP1O94782 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP1O94782 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20■□□□□ 0.79
USP1O94782 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP1O94782 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20■□□□□ 0.79
USP1O94782 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20■□□□□ 0.79
USP1O94782 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP1O94782 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20■□□□□ 0.79
USP1O94782 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP1O94782 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
USP1O94782 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20■□□□□ 0.79
USP1O94782 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP1O94782 AC023632.3-201ENST00000521633 145 ntBASIC20■□□□□ 0.79
USP1O94782 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20■□□□□ 0.79
USP1O94782 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
USP1O94782 AC073111.5-205ENST00000641717 521 ntBASIC20■□□□□ 0.79
USP1O94782 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP1O94782 KRT17P1-201ENST00000399211 1546 ntBASIC20■□□□□ 0.79
USP1O94782 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20■□□□□ 0.79
USP1O94782 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20■□□□□ 0.79
USP1O94782 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
USP1O94782 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
USP1O94782 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20■□□□□ 0.79
USP1O94782 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
USP1O94782 AP001271.2-201ENST00000624018 1556 ntBASIC20■□□□□ 0.79
USP1O94782 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP1O94782 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP1O94782 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.99■□□□□ 0.79
USP1O94782 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.99■□□□□ 0.79
USP1O94782 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USP1O94782 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP1O94782 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.99■□□□□ 0.79
USP1O94782 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.99■□□□□ 0.79
USP1O94782 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USP1O94782 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.99■□□□□ 0.79
USP1O94782 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.99■□□□□ 0.79
USP1O94782 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.99■□□□□ 0.79
USP1O94782 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP1O94782 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP1O94782 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP1O94782 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
USP1O94782 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.99■□□□□ 0.79
USP1O94782 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.98■□□□□ 0.79
USP1O94782 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP1O94782 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.98■□□□□ 0.79
USP1O94782 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USP1O94782 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP1O94782 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USP1O94782 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.98■□□□□ 0.79
USP1O94782 AC133552.2-202ENST00000575694 574 ntBASIC19.98■□□□□ 0.79
USP1O94782 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
USP1O94782 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USP1O94782 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP1O94782 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.98■□□□□ 0.79
USP1O94782 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.98■□□□□ 0.79
USP1O94782 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.98■□□□□ 0.79
USP1O94782 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP1O94782 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP1O94782 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP1O94782 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.97■□□□□ 0.79
USP1O94782 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP1O94782 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP1O94782 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP1O94782 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP1O94782 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP1O94782 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.97■□□□□ 0.79
USP1O94782 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP1O94782 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
USP1O94782 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms