Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.65■□□□□ 0.58
LDB3O75112 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
LDB3O75112 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
LDB3O75112 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB3O75112 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB3O75112 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB3O75112 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LDB3O75112 POM121L13P-201ENST00000422362 380 ntBASIC18.65■□□□□ 0.58
LDB3O75112 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.65■□□□□ 0.58
LDB3O75112 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.65■□□□□ 0.58
LDB3O75112 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.65■□□□□ 0.58
LDB3O75112 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.65■□□□□ 0.58
LDB3O75112 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LDB3O75112 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.65■□□□□ 0.58
LDB3O75112 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB3O75112 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LDB3O75112 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB3O75112 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB3O75112 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LDB3O75112 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB3O75112 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
LDB3O75112 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
LDB3O75112 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LDB3O75112 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LDB3O75112 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.64■□□□□ 0.57
LDB3O75112 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LDB3O75112 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LDB3O75112 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
LDB3O75112 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LDB3O75112 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LDB3O75112 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LDB3O75112 POU5F1P3-201ENST00000428824 1078 ntBASIC18.64■□□□□ 0.57
LDB3O75112 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.64■□□□□ 0.57
LDB3O75112 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.64■□□□□ 0.57
LDB3O75112 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.64■□□□□ 0.57
LDB3O75112 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.64■□□□□ 0.57
LDB3O75112 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.64■□□□□ 0.57
LDB3O75112 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LDB3O75112 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LDB3O75112 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.64■□□□□ 0.57
LDB3O75112 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LDB3O75112 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LDB3O75112 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LDB3O75112 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.64■□□□□ 0.57
LDB3O75112 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LDB3O75112 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.64■□□□□ 0.57
LDB3O75112 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDB3O75112 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDB3O75112 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDB3O75112 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.63■□□□□ 0.57
LDB3O75112 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDB3O75112 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDB3O75112 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.63■□□□□ 0.57
LDB3O75112 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.63■□□□□ 0.57
LDB3O75112 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.63■□□□□ 0.57
LDB3O75112 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.63■□□□□ 0.57
LDB3O75112 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.63■□□□□ 0.57
LDB3O75112 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.63■□□□□ 0.57
LDB3O75112 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.63■□□□□ 0.57
LDB3O75112 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDB3O75112 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.63■□□□□ 0.57
LDB3O75112 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDB3O75112 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.62■□□□□ 0.57
LDB3O75112 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.62■□□□□ 0.57
LDB3O75112 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDB3O75112 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDB3O75112 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDB3O75112 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDB3O75112 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LDB3O75112 AFG3L1P-217ENST00000557444 2447 ntBASIC18.62■□□□□ 0.57
LDB3O75112 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
LDB3O75112 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDB3O75112 KRT17P3-201ENST00000420566 1262 ntBASIC18.62■□□□□ 0.57
LDB3O75112 FAM201B-201ENST00000458407 597 ntBASIC18.62■□□□□ 0.57
LDB3O75112 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LDB3O75112 AC233263.1-201ENST00000578059 224 ntBASIC18.62■□□□□ 0.57
LDB3O75112 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
LDB3O75112 AC006058.3-201ENST00000606217 1069 ntBASIC18.62■□□□□ 0.57
LDB3O75112 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.62■□□□□ 0.57
LDB3O75112 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.62■□□□□ 0.57
LDB3O75112 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDB3O75112 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDB3O75112 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDB3O75112 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.62■□□□□ 0.57
LDB3O75112 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
LDB3O75112 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
LDB3O75112 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LDB3O75112 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LDB3O75112 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
LDB3O75112 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.61■□□□□ 0.57
LDB3O75112 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LDB3O75112 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LDB3O75112 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LDB3O75112 AC018553.1-201ENST00000616682 1458 ntBASIC18.61■□□□□ 0.57
LDB3O75112 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.61■□□□□ 0.57
LDB3O75112 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.61■□□□□ 0.57
LDB3O75112 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LDB3O75112 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.61■□□□□ 0.57
LDB3O75112 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LDB3O75112 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms