Protein–RNA interactions for Protein: O60832

DKC1, H/ACA ribonucleoprotein complex subunit 4, humanhuman

Known RBP eCLIP

Length 514 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKC1O60832 DDX39B-214ENST00000458640 2003 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.515e-19■■□□□ 13.7
DKC1O60832 DDX39B-220ENST00000482195 1232 ntTSL 211.51□□□□□ -0.575e-19■■□□□ 13.7
DKC1O60832 DDX39B-202ENST00000396172 2133 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.635e-19■■□□□ 13.7
DKC1O60832 DDX39B-215ENST00000462256 4027 ntTSL 210.57□□□□□ -0.725e-19■■□□□ 13.7
DKC1O60832 DDX39B-207ENST00000427214 1005 ntTSL 57.45□□□□□ -1.225e-19■■□□□ 13.7
DKC1O60832 RDX-209ENST00000530131 1911 ntTSL 216.91■□□□□ 0.33e-7■■□□□ 13.6
DKC1O60832 CTBP1-214ENST00000514495 564 ntTSL 231.02■■■□□ 2.562e-7■■□□□ 13.6
DKC1O60832 SLC25A36-206ENST00000502756 796 ntTSL 227.01■■□□□ 1.912e-7■■□□□ 13.6
DKC1O60832 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.392e-7■■□□□ 13.6
DKC1O60832 CTBP1-217ENST00000515399 985 ntTSL 322.08■■□□□ 1.132e-7■■□□□ 13.6
DKC1O60832 SLC25A36-202ENST00000393015 659 ntTSL 522.06■■□□□ 1.122e-7■■□□□ 13.6
DKC1O60832 RBM6-205ENST00000425608 1886 ntTSL 221.99■■□□□ 1.112e-7■■□□□ 13.6
DKC1O60832 RBM6-202ENST00000419610 2128 ntTSL 221.85■■□□□ 1.092e-7■■□□□ 13.6
DKC1O60832 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.18■□□□□ 0.982e-7■■□□□ 13.6
DKC1O60832 CTBP1-208ENST00000506180 843 ntTSL 520.52■□□□□ 0.882e-7■■□□□ 13.6
DKC1O60832 SLC25A36-214ENST00000515813 738 ntTSL 220.45■□□□□ 0.862e-7■■□□□ 13.6
DKC1O60832 RBM6-209ENST00000441115 1876 ntTSL 220.26■□□□□ 0.832e-7■■□□□ 13.6
DKC1O60832 PDE8A-211ENST00000559742 2584 ntTSL 1 (best)19.95■□□□□ 0.782e-7■■□□□ 13.6
DKC1O60832 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.772e-7■■□□□ 13.6
DKC1O60832 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.79■□□□□ 0.763e-14■■□□□ 13.6
DKC1O60832 SLC25A36-205ENST00000502594 1163 ntTSL 1 (best)19.77■□□□□ 0.762e-7■■□□□ 13.6
DKC1O60832 PDE8A-210ENST00000559086 538 ntTSL 419.33■□□□□ 0.682e-7■■□□□ 13.6
DKC1O60832 PDE8A-204ENST00000478717 2722 ntTSL 1 (best)19.15■□□□□ 0.662e-7■■□□□ 13.6
DKC1O60832 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.92■□□□□ 0.622e-7■■□□□ 13.6
DKC1O60832 ALDH3A2-222ENST00000582991 2152 ntTSL 518.59■□□□□ 0.572e-7■■□□□ 13.6
DKC1O60832 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.36■□□□□ 0.532e-7■■□□□ 13.6
DKC1O60832 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.463e-14■■□□□ 13.6
DKC1O60832 PDE8A-205ENST00000485596 2999 ntTSL 1 (best)17.82■□□□□ 0.442e-7■■□□□ 13.6
DKC1O60832 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.71■□□□□ 0.432e-7■■□□□ 13.6
DKC1O60832 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.352e-7■■□□□ 13.6
DKC1O60832 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.342e-7■■□□□ 13.6
DKC1O60832 CTBP1-213ENST00000514210 856 ntTSL 216.81■□□□□ 0.282e-7■■□□□ 13.6
DKC1O60832 CTBP1-212ENST00000513420 704 ntTSL 316.52■□□□□ 0.242e-7■■□□□ 13.6
DKC1O60832 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.222e-7■■□□□ 13.6
DKC1O60832 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.192e-7■■□□□ 13.6
DKC1O60832 SLC25A36-212ENST00000513887 578 ntTSL 315.9■□□□□ 0.142e-7■■□□□ 13.6
DKC1O60832 RBM6-217ENST00000483350 988 ntTSL 315.82■□□□□ 0.122e-7■■□□□ 13.6
DKC1O60832 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.12e-7■■□□□ 13.6
DKC1O60832 SLC25A36-215ENST00000631654 620 ntTSL 515.2■□□□□ 0.022e-7■■□□□ 13.6
DKC1O60832 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.012e-7■■□□□ 13.6
DKC1O60832 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC15.06■□□□□ 02e-7■■□□□ 13.6
DKC1O60832 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC14.93□□□□□ -0.022e-7■■□□□ 13.6
DKC1O60832 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.022e-7■■□□□ 13.6
DKC1O60832 SMAD3-213ENST00000560175 542 ntTSL 414.84□□□□□ -0.033e-14■■□□□ 13.6
DKC1O60832 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.182e-7■■□□□ 13.6
DKC1O60832 SHANK2-221ENST00000618363 434 ntTSL 313.18□□□□□ -0.32e-7■■□□□ 13.6
DKC1O60832 ALDH3A2-203ENST00000395575 3640 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.332e-7■■□□□ 13.6
DKC1O60832 RBM6-213ENST00000454079 4324 ntTSL 212.93□□□□□ -0.342e-7■■□□□ 13.6
DKC1O60832 SLC25A36-208ENST00000507429 3537 ntTSL 1 (best) BASIC12.46□□□□□ -0.412e-7■■□□□ 13.6
DKC1O60832 ALDH3A2-219ENST00000579855 3583 ntAPPRIS P3 TSL 5 BASIC12.31□□□□□ -0.442e-7■■□□□ 13.6
DKC1O60832 ALDH3A2-202ENST00000339618 3828 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.472e-7■■□□□ 13.6
DKC1O60832 PDE8A-208ENST00000557957 3716 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.512e-7■■□□□ 13.6
DKC1O60832 ALDH3A2-206ENST00000472059 3710 ntTSL 211.55□□□□□ -0.562e-7■■□□□ 13.6
DKC1O60832 SMAD3-211ENST00000559460 568 ntTSL 410.75□□□□□ -0.693e-14■■□□□ 13.6
DKC1O60832 ALDH3A2-207ENST00000476965 1383 ntTSL 1 (best)9.31□□□□□ -0.922e-7■■□□□ 13.6
DKC1O60832 SMAD3-212ENST00000559937 579 ntTSL 48.82□□□□□ -13e-14■■□□□ 13.6
DKC1O60832 RBM6-212ENST00000446471 695 ntTSL 47.3□□□□□ -1.242e-7■■□□□ 13.6
DKC1O60832 RBM6-207ENST00000434592 2342 ntTSL 27.25□□□□□ -1.252e-7■■□□□ 13.6
DKC1O60832 RBM6-214ENST00000464013 397 ntTSL 55.53□□□□□ -1.522e-7■■□□□ 13.6
DKC1O60832 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC4.24□□□□□ -1.732e-7■■□□□ 13.6
DKC1O60832 ASAP1-216ENST00000524367 962 ntTSL 53.55□□□□□ -1.847e-7■■□□□ 13.6
DKC1O60832 ALDH3A2-212ENST00000573947 572 ntTSL 43.47□□□□□ -1.852e-7■■□□□ 13.6
DKC1O60832 RNASET2-209ENST00000499370 2164 ntTSL 211.41□□□□□ -0.585e-7■■□□□ 13.5
DKC1O60832 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.17■□□□□ 0.822e-7■■□□□ 13.5
DKC1O60832 DAP3-212ENST00000471214 1287 ntTSL 517.32■□□□□ 0.362e-7■■□□□ 13.5
DKC1O60832 DAP3-203ENST00000421487 1470 ntTSL 2 BASIC14.08□□□□□ -0.162e-7■■□□□ 13.5
DKC1O60832 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.172e-7■■□□□ 13.5
DKC1O60832 DAP3-225ENST00000535183 1894 ntTSL 2 BASIC13.62□□□□□ -0.232e-7■■□□□ 13.5
DKC1O60832 DAP3-202ENST00000368336 2089 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.432e-7■■□□□ 13.5
DKC1O60832 DAP3-211ENST00000470830 439 ntTSL 39.52□□□□□ -0.892e-7■■□□□ 13.5
DKC1O60832 DAP3-206ENST00000462978 689 ntTSL 36.77□□□□□ -1.332e-7■■□□□ 13.5
DKC1O60832 DAP3-219ENST00000479151 725 ntTSL 55.19□□□□□ -1.582e-7■■□□□ 13.5
DKC1O60832 DAP3-224ENST00000497826 807 ntTSL 54.9□□□□□ -1.632e-7■■□□□ 13.5
DKC1O60832 DAP3-208ENST00000463575 550 ntTSL 54.67□□□□□ -1.662e-7■■□□□ 13.5
DKC1O60832 DAP3-210ENST00000466384 373 ntTSL 23.38□□□□□ -1.872e-7■■□□□ 13.5
DKC1O60832 SNORA7B-201ENST00000384360 139 ntBASIC8.9□□□□□ -0.981e-65■■□□□ 13.4
DKC1O60832 RPL32P3-203ENST00000506593 498 ntTSL 5 BASIC8.8□□□□□ -11e-65■■□□□ 13.4
DKC1O60832 ATL2-205ENST00000416222 593 ntTSL 418.37■□□□□ 0.532e-9■■□□□ 13.4
DKC1O60832 EEF2-207ENST00000600794 352 ntTSL 310.34□□□□□ -0.752e-18■■□□□ 13.4
DKC1O60832 XRCC5-202ENST00000392133 3761 ntAPPRIS P1 TSL 5 BASIC9.23□□□□□ -0.932e-9■■□□□ 13.4
DKC1O60832 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.32e-9■■□□□ 13.4
DKC1O60832 XRCC5-206ENST00000460284 2962 ntTSL 1 (best)6.31□□□□□ -1.42e-9■■□□□ 13.4
DKC1O60832 SNORD64-201ENST00000386683 67 ntBASIC-1.25□□□□□ -2.614e-29■■□□□ 13.4
DKC1O60832 SNORD116-23-201ENST00000384645 92 ntBASIC4.35□□□□□ -1.717e-54■■□□□ 13.3
DKC1O60832 RPTOR-206ENST00000573746 688 ntTSL 210.13□□□□□ -0.796e-12■■□□□ 13.3
DKC1O60832 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.45■■□□□ 1.029e-12■■□□□ 13.3
DKC1O60832 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.849e-12■■□□□ 13.3
DKC1O60832 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.251e-22■■□□□ 13.3
DKC1O60832 KANK4-203ENST00000371150 3023 ntTSL 2 BASIC13.01□□□□□ -0.339e-12■■□□□ 13.3
DKC1O60832 EIF4A1-216ENST00000580888 710 ntTSL 219.56■□□□□ 0.721e-323■■□□□ 13.3
DKC1O60832 EIF4A1-235ENST00000584860 1109 ntTSL 315.31■□□□□ 0.041e-323■■□□□ 13.3
DKC1O60832 EIF4A1-236ENST00000584901 1021 ntTSL 212.9□□□□□ -0.341e-323■■□□□ 13.3
DKC1O60832 EIF4A1-229ENST00000583802 563 ntTSL 412.06□□□□□ -0.481e-323■■□□□ 13.3
DKC1O60832 EIF4A1-217ENST00000581384 642 ntTSL 511.19□□□□□ -0.621e-323■■□□□ 13.3
DKC1O60832 EIF4A1-233ENST00000584784 818 ntTSL 510.93□□□□□ -0.661e-323■■□□□ 13.3
DKC1O60832 EIF4A1-209ENST00000578495 916 ntTSL 510.21□□□□□ -0.771e-323■■□□□ 13.3
DKC1O60832 EIF4A1-237ENST00000585024 577 ntTSL 49.55□□□□□ -0.881e-323■■□□□ 13.3
DKC1O60832 EIF4A1-211ENST00000578754 547 ntTSL 46.08□□□□□ -1.441e-323■■□□□ 13.3
DKC1O60832 SREBF1-203ENST00000395751 4653 ntTSL 218.45■□□□□ 0.547e-7■■□□□ 13.3
DKC1O60832 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.512e-14■■□□□ 13.3
Retrieved 100 of 8,567 protein–RNA pairs in 144 ms