Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SNX3O60493 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.51■□□□□ 0.71
SNX3O60493 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SNX3O60493 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SNX3O60493 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
SNX3O60493 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SNX3O60493 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SNX3O60493 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.51■□□□□ 0.71
SNX3O60493 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.51■□□□□ 0.71
SNX3O60493 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.51■□□□□ 0.71
SNX3O60493 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.51■□□□□ 0.71
SNX3O60493 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SNX3O60493 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SNX3O60493 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SNX3O60493 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.51■□□□□ 0.71
SNX3O60493 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SNX3O60493 NOC2LP2-201ENST00000407594 1944 ntBASIC19.51■□□□□ 0.71
SNX3O60493 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SNX3O60493 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.51■□□□□ 0.71
SNX3O60493 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
SNX3O60493 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SNX3O60493 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.5■□□□□ 0.71
SNX3O60493 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SNX3O60493 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SNX3O60493 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC19.5■□□□□ 0.71
SNX3O60493 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC19.5■□□□□ 0.71
SNX3O60493 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SNX3O60493 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.5■□□□□ 0.71
SNX3O60493 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
SNX3O60493 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.5■□□□□ 0.71
SNX3O60493 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SNX3O60493 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SNX3O60493 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SNX3O60493 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SNX3O60493 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SNX3O60493 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SNX3O60493 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
SNX3O60493 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.5■□□□□ 0.71
SNX3O60493 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SNX3O60493 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.5■□□□□ 0.71
SNX3O60493 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SNX3O60493 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SNX3O60493 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SNX3O60493 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SNX3O60493 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.5■□□□□ 0.71
SNX3O60493 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.49■□□□□ 0.71
SNX3O60493 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SNX3O60493 NOC2LP1-202ENST00000452600 2235 ntBASIC19.49■□□□□ 0.71
SNX3O60493 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.49■□□□□ 0.71
SNX3O60493 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SNX3O60493 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SNX3O60493 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SNX3O60493 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
SNX3O60493 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.49■□□□□ 0.71
SNX3O60493 BICD1-207ENST00000551848 1962 ntBASIC19.49■□□□□ 0.71
SNX3O60493 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.49■□□□□ 0.71
SNX3O60493 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
SNX3O60493 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SNX3O60493 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SNX3O60493 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
SNX3O60493 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
SNX3O60493 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SNX3O60493 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.49■□□□□ 0.71
SNX3O60493 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.48■□□□□ 0.71
SNX3O60493 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SNX3O60493 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SNX3O60493 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
SNX3O60493 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SNX3O60493 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SNX3O60493 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SNX3O60493 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SNX3O60493 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SNX3O60493 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC19.48■□□□□ 0.71
SNX3O60493 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SNX3O60493 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SNX3O60493 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SNX3O60493 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SNX3O60493 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SNX3O60493 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SNX3O60493 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.48■□□□□ 0.71
SNX3O60493 WIZP1-201ENST00000531444 2299 ntBASIC19.48■□□□□ 0.71
SNX3O60493 AL354751.1-201ENST00000412768 1863 ntBASIC19.48■□□□□ 0.71
SNX3O60493 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SNX3O60493 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SNX3O60493 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
SNX3O60493 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SNX3O60493 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SNX3O60493 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SNX3O60493 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SNX3O60493 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SNX3O60493 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.47■□□□□ 0.71
SNX3O60493 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SNX3O60493 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
SNX3O60493 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SNX3O60493 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SNX3O60493 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.47■□□□□ 0.71
SNX3O60493 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.47■□□□□ 0.71
SNX3O60493 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SNX3O60493 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
SNX3O60493 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms