Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 PKD1P6-201ENST00000343738 4769 ntBASIC21.28■■□□□ 1
SMIM28A0A1B0GU29 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
SMIM28A0A1B0GU29 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
SMIM28A0A1B0GU29 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SMIM28A0A1B0GU29 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
SMIM28A0A1B0GU29 YBX1P10-201ENST00000444752 975 ntBASIC21.28■■□□□ 1
SMIM28A0A1B0GU29 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC21.28■■□□□ 1
SMIM28A0A1B0GU29 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC21.28■■□□□ 1
SMIM28A0A1B0GU29 GRAP-204ENST00000573099 846 ntTSL 3 BASIC21.28■■□□□ 1
SMIM28A0A1B0GU29 MIR4785-201ENST00000585005 73 ntBASIC21.28■■□□□ 1
SMIM28A0A1B0GU29 CD177P1-201ENST00000606252 935 ntBASIC21.28■■□□□ 1
SMIM28A0A1B0GU29 AC073195.1-201ENST00000607241 877 ntBASIC21.28■■□□□ 1
SMIM28A0A1B0GU29 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SMIM28A0A1B0GU29 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
SMIM28A0A1B0GU29 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
SMIM28A0A1B0GU29 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC21.28■■□□□ 1
SMIM28A0A1B0GU29 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.28■■□□□ 1
SMIM28A0A1B0GU29 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.28■■□□□ 1
SMIM28A0A1B0GU29 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SMIM28A0A1B0GU29 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
SMIM28A0A1B0GU29 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.27■■□□□ 1
SMIM28A0A1B0GU29 MOK-225ENST00000522867 1883 ntTSL 5 BASIC21.27■■□□□ 1
SMIM28A0A1B0GU29 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.27■■□□□ 1
SMIM28A0A1B0GU29 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.27■■□□□ 1
SMIM28A0A1B0GU29 AP002982.1-201ENST00000492365 877 ntBASIC21.27■■□□□ 1
SMIM28A0A1B0GU29 DHDH-203ENST00000522614 776 ntTSL 5 BASIC21.27■■□□□ 1
SMIM28A0A1B0GU29 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC21.27■■□□□ 1
SMIM28A0A1B0GU29 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC21.27■■□□□ 1
SMIM28A0A1B0GU29 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SMIM28A0A1B0GU29 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC21.27■■□□□ 1
SMIM28A0A1B0GU29 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
SMIM28A0A1B0GU29 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SMIM28A0A1B0GU29 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC21.27■■□□□ 1
SMIM28A0A1B0GU29 AL391422.3-201ENST00000603791 2761 ntBASIC21.27■■□□□ 1
SMIM28A0A1B0GU29 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
SMIM28A0A1B0GU29 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
SMIM28A0A1B0GU29 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 GOLGA6L3-201ENST00000507199 1679 ntBASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 FAM197Y1-201ENST00000421178 764 ntBASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 KRT18P16-201ENST00000510337 1294 ntBASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMIM28A0A1B0GU29 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.25■□□□□ 0.99
SMIM28A0A1B0GU29 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SMIM28A0A1B0GU29 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMIM28A0A1B0GU29 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.24■□□□□ 0.99
SMIM28A0A1B0GU29 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC21.24■□□□□ 0.99
SMIM28A0A1B0GU29 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SMIM28A0A1B0GU29 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
SMIM28A0A1B0GU29 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC21.24■□□□□ 0.99
SMIM28A0A1B0GU29 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC21.24■□□□□ 0.99
SMIM28A0A1B0GU29 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms