Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 AF186192.3-201ENST00000583427 947 ntBASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAV40A0A0B4J280 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
TRAV40A0A0B4J280 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
TRAV40A0A0B4J280 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC16.14■□□□□ 0.17
TRAV40A0A0B4J280 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV40A0A0B4J280 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC16.14■□□□□ 0.17
TRAV40A0A0B4J280 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV40A0A0B4J280 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
TRAV40A0A0B4J280 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
TRAV40A0A0B4J280 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC16.14■□□□□ 0.17
TRAV40A0A0B4J280 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV40A0A0B4J280 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
TRAV40A0A0B4J280 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC16.14■□□□□ 0.17
TRAV40A0A0B4J280 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC16.14■□□□□ 0.17
TRAV40A0A0B4J280 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
TRAV40A0A0B4J280 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC16.14■□□□□ 0.17
TRAV40A0A0B4J280 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV40A0A0B4J280 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
TRAV40A0A0B4J280 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.14■□□□□ 0.17
TRAV40A0A0B4J280 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV40A0A0B4J280 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV40A0A0B4J280 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 SMG8-203ENST00000578922 2178 ntBASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 SAPCD2P4-201ENST00000424595 1171 ntBASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 AP002982.1-201ENST00000492365 877 ntBASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 BX088651.1-201ENST00000540551 451 ntBASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 AC026471.5-201ENST00000615068 467 ntBASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 ME2-216ENST00000639850 2331 ntTSL 5 BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC16.13■□□□□ 0.17
TRAV40A0A0B4J280 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 CD177P1-201ENST00000606252 935 ntBASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV40A0A0B4J280 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 AP006587.1-201ENST00000534129 1502 ntBASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 FAM197Y1-201ENST00000421178 764 ntBASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 AL355355.2-201ENST00000442321 338 ntBASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms