Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 RNA5SP284-201ENST00000384547 118 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AP000281.1-201ENST00000444036 316 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC007106.1-201ENST00000509666 600 ntTSL 4 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 RPL10P18-201ENST00000519384 309 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC007346.1-201ENST00000569208 867 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC011445.2-201ENST00000599274 173 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC096708.4-201ENST00000620563 552 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AL590396.3-201ENST00000636334 300 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 HIPK1-211ENST00000626993 8016 ntTSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 CPB2-AS1-204ENST00000606991 3218 ntTSL 2 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 MIR130B-202ENST00000385018 82 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 RPS10P21-201ENST00000430654 475 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC010240.2-201ENST00000445363 1205 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC092164.1-201ENST00000452212 726 ntTSL 2 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 BX323845.2-201ENST00000458382 234 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC008443.6-204ENST00000511517 738 ntTSL 2 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 RPL7L1P4-201ENST00000513004 707 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC233702.7-202ENST00000582941 211 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 C1GALT1-201ENST00000223122 6078 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 KLF7-202ENST00000412414 7954 ntTSL 2 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 CDH17-203ENST00000450165 2625 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 OR4D9-202ENST00000641278 6063 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AF131215.2-201ENST00000531549 1710 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 MTHFD1P1-201ENST00000413059 2764 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 RN7SKP47-201ENST00000365347 328 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC069154.1-201ENST00000432914 542 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 RPL24-206ENST00000495401 478 ntTSL 2 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC023827.2-201ENST00000566880 1061 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC015871.3-201ENST00000618835 2261 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 RN7SKP275-201ENST00000364626 301 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 RPS3AP2-201ENST00000407190 754 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC017035.1-201ENST00000411999 1115 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 RPS3P2-201ENST00000421346 701 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC092865.3-201ENST00000425390 1026 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 RN7SL515P-201ENST00000463999 297 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 RPL5P11-201ENST00000498068 893 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC080011.1-201ENST00000552378 989 ntTSL 3 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 STARD13-AS-232ENST00000609137 882 ntTSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC018692.2-201ENST00000624130 348 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC004943.1-203ENST00000624370 1074 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC093227.1-201ENST00000588040 1360 ntTSL 3 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 MRPL22-206ENST00000522038 3162 ntAPPRIS ALT1 TSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 EYA3-203ENST00000373871 6085 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 FREM1-202ENST00000380880 7324 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 RPS7-201ENST00000304921 786 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 IGLC4-201ENST00000517690 248 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AL365223.1-201ENST00000574864 1297 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 MIR6793-201ENST00000612376 63 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms