Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 KPNA1-201ENST00000344337 6830 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 NCOA4-205ENST00000583565 2371 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 SORBS1-212ENST00000371249 5927 ntAPPRIS P3 TSL 1 (best) BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 NOX1-201ENST00000217885 1734 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 RAD54B-202ENST00000336148 3068 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 CD160-205ENST00000616463 3388 ntAPPRIS ALT2 TSL 2 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 DDX10P2-201ENST00000417796 2614 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 ADGRF2-204ENST00000507065 3043 ntTSL 5 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 NANOG-201ENST00000229307 5183 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 SSX6-201ENST00000376932 562 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 MS4A3-203ENST00000395032 867 ntTSL 2 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AL391419.1-201ENST00000398901 1275 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AL591368.1-202ENST00000413050 548 ntTSL 3 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 CYTOR-207ENST00000414584 772 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 ZDHHC20P2-201ENST00000424108 429 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 VN1R35P-201ENST00000428102 693 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 VDAC2P3-201ENST00000430995 828 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 KATNBL1P3-201ENST00000443475 909 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 TRBV5-4-201ENST00000454561 544 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AL122001.1-201ENST00000457027 370 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AC091544.1-201ENST00000484702 348 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AC095059.2-201ENST00000510601 933 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 NPIPB14P-203ENST00000532298 987 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AC125611.1-201ENST00000549563 229 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AL358332.1-201ENST00000555649 813 ntTSL 5 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AL118558.1-201ENST00000557551 566 ntTSL 3 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AL132640.2-202ENST00000559732 614 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 UBE2CP4-201ENST00000561405 535 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AL512428.1-201ENST00000562221 654 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 EIF4EBP2P2-201ENST00000563883 333 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AC005518.2-201ENST00000603254 282 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AC004890.3-201ENST00000605566 1095 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AC092106.3-201ENST00000611308 722 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AC080112.3-201ENST00000612552 880 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AC093783.1-201ENST00000612976 329 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 MKI67P1-201ENST00000604297 1460 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 SOCS5P5-201ENST00000402732 1586 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 PSG5-202ENST00000366175 1766 ntTSL 5 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 OR2T6-202ENST00000641644 4670 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 FBXL4-202ENST00000369244 8035 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 HDAC9-218ENST00000456174 2307 ntTSL 2 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 AC116535.1-201ENST00000499765 2335 ntTSL 2 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 IL1B-201ENST00000263341 1631 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 CD2-202ENST00000369478 1609 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 PRLR-213ENST00000514088 1440 ntTSL 5 BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 CASC19-205ENST00000641013 1411 ntBASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
TRAIPQ9BWF2 SLC8A3-208ENST00000533541 3409 ntTSL 2 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AC133552.3-201ENST00000572236 1869 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 CASC19-284ENST00000642142 1868 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 ZNF189-202ENST00000339664 3021 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AL022163.1-201ENST00000430261 1569 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 MS4A6A-213ENST00000530839 1383 ntAPPRIS P1 TSL 2 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AL591543.1-202ENST00000642095 4149 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 NACA3P-201ENST00000359690 648 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 RNA5SP260-201ENST00000363849 111 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AL139327.1-201ENST00000382988 348 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 CREM-214ENST00000395887 849 ntTSL 5 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AL355375.1-201ENST00000405686 392 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 PRELID1P2-201ENST00000407805 396 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 RN7SKP222-201ENST00000410651 315 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 RN7SKP207-201ENST00000411204 303 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 RN7SKP108-201ENST00000411367 328 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AL008987.1-201ENST00000415528 237 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 OR4K6P-201ENST00000416478 897 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AC020983.1-201ENST00000417063 543 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 OR5M12P-201ENST00000423388 929 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 SETP9-201ENST00000423837 832 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AC022022.1-201ENST00000430304 178 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 FTH1P20-201ENST00000434913 548 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 CYCSP11-201ENST00000436426 315 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 DNAJA1P5-201ENST00000440278 943 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AC005002.1-201ENST00000447458 540 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 CDC42P2-201ENST00000448566 569 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 TDGF1P6-201ENST00000463873 448 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 CREM-224ENST00000468236 582 ntTSL 3 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AC096741.1-201ENST00000472250 846 ntBASIC8.28□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms