Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL5A1P20908 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL5A1P20908 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC6.17□□□□□ -1.42
COL5A1P20908 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC6.17□□□□□ -1.42
COL5A1P20908 AC073333.2-201ENST00000603589 769 ntBASIC6.17□□□□□ -1.42
COL5A1P20908 AL359704.2-201ENST00000604335 521 ntBASIC6.17□□□□□ -1.42
COL5A1P20908 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC6.17□□□□□ -1.42
COL5A1P20908 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC6.17□□□□□ -1.42
COL5A1P20908 AC018717.1-201ENST00000457712 1505 ntBASIC6.17□□□□□ -1.42
COL5A1P20908 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
COL5A1P20908 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL5A1P20908 MON2-202ENST00000393630 13275 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL5A1P20908 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A1P20908 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC6.16□□□□□ -1.42
COL5A1P20908 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A1P20908 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A1P20908 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A1P20908 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A1P20908 SNORD16-201ENST00000362803 99 ntBASIC6.16□□□□□ -1.42
COL5A1P20908 AURKA-208ENST00000395915 2114 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A1P20908 MIR1178-201ENST00000408396 91 ntBASIC6.16□□□□□ -1.42
COL5A1P20908 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC6.16□□□□□ -1.42
COL5A1P20908 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC6.16□□□□□ -1.42
COL5A1P20908 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC6.16□□□□□ -1.42
COL5A1P20908 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC6.16□□□□□ -1.42
COL5A1P20908 RN7SL860P-201ENST00000473738 223 ntBASIC6.16□□□□□ -1.42
COL5A1P20908 RN7SL326P-201ENST00000477493 296 ntBASIC6.16□□□□□ -1.42
COL5A1P20908 AC063943.2-201ENST00000495697 534 ntBASIC6.16□□□□□ -1.42
COL5A1P20908 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC6.16□□□□□ -1.42
COL5A1P20908 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC6.16□□□□□ -1.42
COL5A1P20908 SCARNA18.1-201ENST00000516330 83 ntBASIC6.16□□□□□ -1.42
COL5A1P20908 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC6.16□□□□□ -1.42
COL5A1P20908 AC027544.3-201ENST00000535082 757 ntBASIC6.16□□□□□ -1.42
COL5A1P20908 AC233702.7-202ENST00000582941 211 ntBASIC6.16□□□□□ -1.42
COL5A1P20908 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC6.16□□□□□ -1.42
COL5A1P20908 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC6.16□□□□□ -1.42
COL5A1P20908 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC6.16□□□□□ -1.42
COL5A1P20908 AC073046.2-201ENST00000604756 527 ntBASIC6.16□□□□□ -1.42
COL5A1P20908 AL357153.4-201ENST00000620487 1016 ntBASIC6.16□□□□□ -1.42
COL5A1P20908 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC6.16□□□□□ -1.42
COL5A1P20908 OR7E91P-202ENST00000642062 1198 ntBASIC6.16□□□□□ -1.42
COL5A1P20908 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A1P20908 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A1P20908 TMED8-201ENST00000216468 7784 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A1P20908 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A1P20908 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A1P20908 EML5-201ENST00000380664 5910 ntTSL 5 BASIC6.16□□□□□ -1.42
COL5A1P20908 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A1P20908 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A1P20908 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC6.16□□□□□ -1.42
COL5A1P20908 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A1P20908 DPCR1-201ENST00000304311 2658 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
COL5A1P20908 RAPGEF5-202ENST00000401957 6159 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A1P20908 AL031595.3-201ENST00000624919 14262 ntBASIC6.16□□□□□ -1.42
COL5A1P20908 LRP2BP-203ENST00000510776 3055 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A1P20908 OR6J1-201ENST00000540461 4165 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
COL5A1P20908 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL5A1P20908 RN7SKP292-201ENST00000365522 317 ntBASIC6.15□□□□□ -1.42
COL5A1P20908 RNA5SP284-201ENST00000384547 118 ntBASIC6.15□□□□□ -1.42
COL5A1P20908 MIR640-201ENST00000385086 96 ntBASIC6.15□□□□□ -1.42
COL5A1P20908 U3.25-201ENST00000391209 220 ntBASIC6.15□□□□□ -1.42
COL5A1P20908 GTF3AP1-201ENST00000416942 1004 ntBASIC6.15□□□□□ -1.42
COL5A1P20908 RPS7P8-201ENST00000418311 581 ntBASIC6.15□□□□□ -1.42
COL5A1P20908 MARK2P12-201ENST00000420129 585 ntBASIC6.15□□□□□ -1.42
COL5A1P20908 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL5A1P20908 ATP5LP2-201ENST00000440646 311 ntBASIC6.15□□□□□ -1.42
COL5A1P20908 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC6.15□□□□□ -1.42
COL5A1P20908 RPL23AP68-201ENST00000480924 445 ntBASIC6.15□□□□□ -1.42
COL5A1P20908 PPIAP19-201ENST00000486414 492 ntBASIC6.15□□□□□ -1.42
COL5A1P20908 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC6.15□□□□□ -1.42
COL5A1P20908 RNA5SP206-201ENST00000516703 121 ntBASIC6.15□□□□□ -1.42
COL5A1P20908 IGKV2-19-201ENST00000518132 283 ntBASIC6.15□□□□□ -1.42
COL5A1P20908 IGLV3-6-201ENST00000523937 250 ntBASIC6.15□□□□□ -1.42
COL5A1P20908 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC6.15□□□□□ -1.42
COL5A1P20908 AC009656.1-201ENST00000531966 478 ntTSL 3 BASIC6.15□□□□□ -1.42
COL5A1P20908 AC007956.1-201ENST00000555623 542 ntBASIC6.15□□□□□ -1.42
COL5A1P20908 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL5A1P20908 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC6.15□□□□□ -1.42
COL5A1P20908 AP001823.1-201ENST00000604056 1003 ntBASIC6.15□□□□□ -1.42
COL5A1P20908 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC6.15□□□□□ -1.42
COL5A1P20908 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC6.15□□□□□ -1.42
COL5A1P20908 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC6.15□□□□□ -1.42
COL5A1P20908 AL513283.1-203ENST00000640010 891 ntTSL 5 BASIC6.15□□□□□ -1.42
COL5A1P20908 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC6.15□□□□□ -1.42
COL5A1P20908 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
COL5A1P20908 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL5A1P20908 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
COL5A1P20908 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC6.15□□□□□ -1.42
COL5A1P20908 MEP1B-204ENST00000581447 2308 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL5A1P20908 USP3-201ENST00000268049 5311 ntTSL 5 BASIC6.15□□□□□ -1.42
COL5A1P20908 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL5A1P20908 MRPS23-201ENST00000313608 5621 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL5A1P20908 CTNNA1P1-201ENST00000515849 2728 ntBASIC6.15□□□□□ -1.42
COL5A1P20908 MAP2-207ENST00000447185 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL5A1P20908 VTCN1-201ENST00000328189 2289 ntTSL 5 BASIC6.15□□□□□ -1.42
COL5A1P20908 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL5A1P20908 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
COL5A1P20908 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL5A1P20908 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL5A1P20908 SPIRE1-206ENST00000453447 2107 ntTSL 5 BASIC6.15□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms