Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 RN7SL657P-201ENST00000582431 293 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 ZNF431-206ENST00000599296 586 ntTSL 5 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AC002069.2-201ENST00000603580 883 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 ELMO2P1-201ENST00000611569 473 ntTSL 5 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AL353626.1-201ENST00000613429 507 ntTSL 5 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AC004836.1-201ENST00000623032 634 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AC112694.2-201ENST00000623697 768 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 AC241377.2-202ENST00000636462 997 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 BCAS3-234ENST00000639611 108 ntTSL 5 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 BX284613.1-201ENST00000452221 1641 ntBASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 KIAA1257-205ENST00000515659 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 CEP57-207ENST00000537677 1647 ntAPPRIS ALT2 TSL 5 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 MYLK-206ENST00000418370 7282 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 SEM1-215ENST00000615352 2637 ntTSL 5 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 NPIPB4-203ENST00000415645 3606 ntAPPRIS P1 TSL 5 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 TBX5-AS1-201ENST00000528549 3620 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 SEMA6A-210ENST00000510263 3292 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 SGK1-223ENST00000528577 1850 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 OR7D2-201ENST00000344248 3224 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 NPIPB9-202ENST00000550983 2123 ntAPPRIS P2 TSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 LINC02431-202ENST00000505329 1788 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 CEACAM6-201ENST00000199764 2700 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
TRAIPQ9BWF2 RBFOX2-207ENST00000414461 1706 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AC111188.2-201ENST00000529697 1387 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 LRRC2-AS1-201ENST00000599511 2291 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 ERVFRD-1-202ENST00000542862 3184 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 RSPH4A-201ENST00000229554 2825 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 ZMYND8-211ENST00000446994 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 CCL13-201ENST00000225844 851 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 ENSAP3-201ENST00000312710 333 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 SNORD15A-201ENST00000384214 148 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 SNORA10B-201ENST00000384458 133 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 Z75741.2-201ENST00000417272 1167 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AL031584.2-201ENST00000420585 767 ntTSL 3 BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AC012560.1-202ENST00000421324 535 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 ZBTB8OSP2-201ENST00000423890 504 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AC097721.1-201ENST00000427150 1253 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 RNF11P2-201ENST00000427702 440 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AL590682.1-201ENST00000437248 344 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AC107015.1-201ENST00000466902 747 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AC021151.1-201ENST00000506933 183 ntTSL 3 BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AC111000.1-201ENST00000514545 713 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 CEP57L1-214ENST00000521277 3832 ntTSL 2 BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AC026979.2-201ENST00000523733 583 ntTSL 5 BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AP004833.3-201ENST00000531893 322 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AC018523.1-201ENST00000534211 512 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 OSBPL9P5-201ENST00000542581 171 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 TSPAN8-203ENST00000546561 1168 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AC079313.2-201ENST00000550474 564 ntTSL 4 BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 SETP1-201ENST00000556014 845 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 MTND4LP24-201ENST00000572277 291 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AC004223.2-201ENST00000590309 544 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AL109936.2-201ENST00000605350 650 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AC016877.3-201ENST00000606778 504 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AC009237.15-201ENST00000610252 501 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 MIR7162-201ENST00000611134 69 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AC026422.1-201ENST00000623961 452 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 ADAM3A-205ENST00000481351 2379 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 MTCO1P15-201ENST00000529569 1526 ntBASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 TAT-201ENST00000355962 3983 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 SLC25A24-202ENST00000370041 3404 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 PDE1A-201ENST00000351439 2338 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 TEX11-204ENST00000395889 3133 ntAPPRIS P3 TSL 2 BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 MIR17HG-202ENST00000581816 2032 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 ESRRG-221ENST00000493603 5304 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 SIRPB1-205ENST00000381605 3241 ntAPPRIS P3 TSL 1 (best) BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 HDAC9-214ENST00000441542 3210 ntAPPRIS P4 TSL 1 (best) BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 GRAMD2B-212ENST00000513040 2196 ntTSL 2 BASIC8.37□□□□□ -1.07
TRAIPQ9BWF2 YAF2-201ENST00000327791 4156 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 ADGRG7-201ENST00000273352 3140 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 ECT2-206ENST00000417960 4363 ntAPPRIS ALT1 TSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 PAPPA-AS2-201ENST00000438048 1854 ntTSL 2 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 AC025040.2-201ENST00000558657 1852 ntBASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 NOS2P3-202ENST00000458685 3328 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 TIMM21-204ENST00000580087 2524 ntTSL 5 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 ZKSCAN5-201ENST00000326775 4178 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 CXCR6-202ENST00000438735 2242 ntAPPRIS P1 TSL 3 BASIC8.36□□□□□ -1.07
TRAIPQ9BWF2 NQO1-201ENST00000320623 2912 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms