Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
ZC3H4Q9UPT8 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC24.13■■□□□ 1.45
ZC3H4Q9UPT8 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
ZC3H4Q9UPT8 CD70-202ENST00000423145 881 ntTSL 2 BASIC24.13■■□□□ 1.45
ZC3H4Q9UPT8 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC24.13■■□□□ 1.45
ZC3H4Q9UPT8 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
ZC3H4Q9UPT8 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC24.13■■□□□ 1.45
ZC3H4Q9UPT8 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC24.13■■□□□ 1.45
ZC3H4Q9UPT8 AC130371.2-201ENST00000619443 611 ntBASIC24.13■■□□□ 1.45
ZC3H4Q9UPT8 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
ZC3H4Q9UPT8 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
ZC3H4Q9UPT8 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC24.13■■□□□ 1.45
ZC3H4Q9UPT8 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
ZC3H4Q9UPT8 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
ZC3H4Q9UPT8 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
ZC3H4Q9UPT8 FDX2-206ENST00000492239 773 ntTSL 2 BASIC24.12■■□□□ 1.45
ZC3H4Q9UPT8 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
ZC3H4Q9UPT8 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
ZC3H4Q9UPT8 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
ZC3H4Q9UPT8 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC24.12■■□□□ 1.45
ZC3H4Q9UPT8 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
ZC3H4Q9UPT8 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
ZC3H4Q9UPT8 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC24.12■■□□□ 1.45
ZC3H4Q9UPT8 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
ZC3H4Q9UPT8 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC24.12■■□□□ 1.45
ZC3H4Q9UPT8 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
ZC3H4Q9UPT8 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC24.12■■□□□ 1.45
ZC3H4Q9UPT8 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
ZC3H4Q9UPT8 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
ZC3H4Q9UPT8 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
ZC3H4Q9UPT8 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
ZC3H4Q9UPT8 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
ZC3H4Q9UPT8 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
ZC3H4Q9UPT8 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC24.11■■□□□ 1.45
ZC3H4Q9UPT8 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC24.11■■□□□ 1.45
ZC3H4Q9UPT8 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
ZC3H4Q9UPT8 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
ZC3H4Q9UPT8 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
ZC3H4Q9UPT8 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC24.11■■□□□ 1.45
ZC3H4Q9UPT8 AC127496.7-201ENST00000625110 1798 ntBASIC24.11■■□□□ 1.45
ZC3H4Q9UPT8 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
ZC3H4Q9UPT8 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
ZC3H4Q9UPT8 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC24.11■■□□□ 1.45
ZC3H4Q9UPT8 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC24.11■■□□□ 1.45
ZC3H4Q9UPT8 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC24.11■■□□□ 1.45
ZC3H4Q9UPT8 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC24.11■■□□□ 1.45
ZC3H4Q9UPT8 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 AC007663.1-201ENST00000438948 1240 ntBASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 AC233723.2-201ENST00000623798 2106 ntBASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 CALM3-202ENST00000391918 702 ntTSL 2 BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 CD81-212ENST00000526072 1172 ntTSL 5 BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
ZC3H4Q9UPT8 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 AL136038.3-201ENST00000561909 1096 ntBASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
ZC3H4Q9UPT8 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC24.08■■□□□ 1.45
ZC3H4Q9UPT8 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.45
ZC3H4Q9UPT8 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC24.08■■□□□ 1.45
ZC3H4Q9UPT8 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
ZC3H4Q9UPT8 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC24.08■■□□□ 1.45
ZC3H4Q9UPT8 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC24.08■■□□□ 1.45
ZC3H4Q9UPT8 AC092338.2-201ENST00000568827 1415 ntBASIC24.08■■□□□ 1.45
ZC3H4Q9UPT8 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
ZC3H4Q9UPT8 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
ZC3H4Q9UPT8 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC24.08■■□□□ 1.45
ZC3H4Q9UPT8 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC24.08■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms