Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 AL049597.2-201ENST00000565575 961 ntBASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 AL353807.1-201ENST00000427475 662 ntBASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 MIR6786-201ENST00000616843 113 ntBASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 MFF-203ENST00000349901 1716 ntTSL 2 BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 AC026310.3-201ENST00000625186 2373 ntBASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 LSR-203ENST00000360798 1963 ntTSL 2 BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NOTCH3Q9UM47 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 AC011484.1-201ENST00000377652 1995 ntBASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 AL355355.2-201ENST00000442321 338 ntBASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NOTCH3Q9UM47 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NOTCH3Q9UM47 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC15.27■□□□□ 0.04
NOTCH3Q9UM47 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
NOTCH3Q9UM47 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NOTCH3Q9UM47 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NOTCH3Q9UM47 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NOTCH3Q9UM47 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC15.27■□□□□ 0.04
NOTCH3Q9UM47 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC15.27■□□□□ 0.04
NOTCH3Q9UM47 RER1-204ENST00000378518 522 ntTSL 3 BASIC15.27■□□□□ 0.04
NOTCH3Q9UM47 CRAT-202ENST00000393384 973 ntTSL 2 BASIC15.27■□□□□ 0.04
NOTCH3Q9UM47 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC15.27■□□□□ 0.04
NOTCH3Q9UM47 AL390955.1-201ENST00000428694 934 ntBASIC15.27■□□□□ 0.04
NOTCH3Q9UM47 AC026471.5-201ENST00000615068 467 ntBASIC15.27■□□□□ 0.04
NOTCH3Q9UM47 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
NOTCH3Q9UM47 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NOTCH3Q9UM47 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NOTCH3Q9UM47 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NOTCH3Q9UM47 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
NOTCH3Q9UM47 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
NOTCH3Q9UM47 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC15.27■□□□□ 0.03
NOTCH3Q9UM47 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
NOTCH3Q9UM47 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
NOTCH3Q9UM47 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms