Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 AC011484.1-201ENST00000377652 1995 ntBASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.71■□□□□ 0.91
LIMD1Q9UGP4 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
LIMD1Q9UGP4 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.71■□□□□ 0.91
LIMD1Q9UGP4 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMD1Q9UGP4 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMD1Q9UGP4 ATP5G1P1-201ENST00000448724 379 ntBASIC20.71■□□□□ 0.91
LIMD1Q9UGP4 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC20.71■□□□□ 0.91
LIMD1Q9UGP4 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
LIMD1Q9UGP4 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.71■□□□□ 0.91
LIMD1Q9UGP4 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
LIMD1Q9UGP4 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.71■□□□□ 0.91
LIMD1Q9UGP4 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LIMD1Q9UGP4 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMD1Q9UGP4 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMD1Q9UGP4 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
LIMD1Q9UGP4 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMD1Q9UGP4 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMD1Q9UGP4 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
LIMD1Q9UGP4 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.7■□□□□ 0.9
LIMD1Q9UGP4 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMD1Q9UGP4 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
LIMD1Q9UGP4 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
LIMD1Q9UGP4 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.7■□□□□ 0.9
LIMD1Q9UGP4 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.7■□□□□ 0.9
LIMD1Q9UGP4 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMD1Q9UGP4 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.7■□□□□ 0.9
LIMD1Q9UGP4 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
LIMD1Q9UGP4 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
LIMD1Q9UGP4 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMD1Q9UGP4 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.7■□□□□ 0.9
LIMD1Q9UGP4 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMD1Q9UGP4 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMD1Q9UGP4 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.69■□□□□ 0.9
LIMD1Q9UGP4 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.69■□□□□ 0.9
LIMD1Q9UGP4 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC20.69■□□□□ 0.9
LIMD1Q9UGP4 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.69■□□□□ 0.9
LIMD1Q9UGP4 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.69■□□□□ 0.9
LIMD1Q9UGP4 AC006011.2-201ENST00000621313 1158 ntBASIC20.69■□□□□ 0.9
LIMD1Q9UGP4 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
LIMD1Q9UGP4 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.69■□□□□ 0.9
LIMD1Q9UGP4 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIMD1Q9UGP4 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
LIMD1Q9UGP4 KRT8P36-201ENST00000489121 1440 ntBASIC20.69■□□□□ 0.9
LIMD1Q9UGP4 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
LIMD1Q9UGP4 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMD1Q9UGP4 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.68■□□□□ 0.9
LIMD1Q9UGP4 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 ECEL1P2-202ENST00000465689 757 ntBASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
LIMD1Q9UGP4 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMD1Q9UGP4 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms