Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
USP42Q9H9J4 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
USP42Q9H9J4 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
USP42Q9H9J4 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
USP42Q9H9J4 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
USP42Q9H9J4 MESTP1-201ENST00000404287 994 ntBASIC25.3■■□□□ 1.64
USP42Q9H9J4 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC25.3■■□□□ 1.64
USP42Q9H9J4 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC25.3■■□□□ 1.64
USP42Q9H9J4 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC25.3■■□□□ 1.64
USP42Q9H9J4 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC25.3■■□□□ 1.64
USP42Q9H9J4 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC25.3■■□□□ 1.64
USP42Q9H9J4 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC25.3■■□□□ 1.64
USP42Q9H9J4 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC25.3■■□□□ 1.64
USP42Q9H9J4 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
USP42Q9H9J4 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
USP42Q9H9J4 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
USP42Q9H9J4 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC25.3■■□□□ 1.64
USP42Q9H9J4 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
USP42Q9H9J4 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
USP42Q9H9J4 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC25.29■■□□□ 1.64
USP42Q9H9J4 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
USP42Q9H9J4 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
USP42Q9H9J4 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
USP42Q9H9J4 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
USP42Q9H9J4 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
USP42Q9H9J4 HLA-G-202ENST00000376815 851 ntBASIC25.29■■□□□ 1.64
USP42Q9H9J4 HLA-G-203ENST00000376818 1127 ntBASIC25.29■■□□□ 1.64
USP42Q9H9J4 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC25.29■■□□□ 1.64
USP42Q9H9J4 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC25.29■■□□□ 1.64
USP42Q9H9J4 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC25.29■■□□□ 1.64
USP42Q9H9J4 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC25.29■■□□□ 1.64
USP42Q9H9J4 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC25.29■■□□□ 1.64
USP42Q9H9J4 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
USP42Q9H9J4 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC25.29■■□□□ 1.64
USP42Q9H9J4 AC006011.2-201ENST00000621313 1158 ntBASIC25.29■■□□□ 1.64
USP42Q9H9J4 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC25.29■■□□□ 1.64
USP42Q9H9J4 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
USP42Q9H9J4 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
USP42Q9H9J4 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
USP42Q9H9J4 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC25.28■■□□□ 1.64
USP42Q9H9J4 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
USP42Q9H9J4 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC25.28■■□□□ 1.64
USP42Q9H9J4 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC25.28■■□□□ 1.64
USP42Q9H9J4 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
USP42Q9H9J4 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
USP42Q9H9J4 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC25.28■■□□□ 1.64
USP42Q9H9J4 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
USP42Q9H9J4 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
USP42Q9H9J4 AC006128.1-201ENST00000624704 1661 ntBASIC25.28■■□□□ 1.64
USP42Q9H9J4 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC25.28■■□□□ 1.64
USP42Q9H9J4 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
USP42Q9H9J4 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
USP42Q9H9J4 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
USP42Q9H9J4 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
USP42Q9H9J4 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC25.27■■□□□ 1.64
USP42Q9H9J4 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USP42Q9H9J4 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USP42Q9H9J4 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC25.27■■□□□ 1.64
USP42Q9H9J4 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC25.27■■□□□ 1.64
USP42Q9H9J4 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USP42Q9H9J4 WWOX-216ENST00000569818 525 ntBASIC25.27■■□□□ 1.64
USP42Q9H9J4 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC25.27■■□□□ 1.64
USP42Q9H9J4 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USP42Q9H9J4 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC25.26■■□□□ 1.64
USP42Q9H9J4 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
USP42Q9H9J4 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
USP42Q9H9J4 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
USP42Q9H9J4 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
USP42Q9H9J4 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
USP42Q9H9J4 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC25.26■■□□□ 1.63
USP42Q9H9J4 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC25.26■■□□□ 1.63
USP42Q9H9J4 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC25.26■■□□□ 1.63
USP42Q9H9J4 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC25.26■■□□□ 1.63
USP42Q9H9J4 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC25.26■■□□□ 1.63
USP42Q9H9J4 USP48-205ENST00000421625 2818 ntTSL 2 BASIC25.26■■□□□ 1.63
USP42Q9H9J4 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
USP42Q9H9J4 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC25.26■■□□□ 1.63
USP42Q9H9J4 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
USP42Q9H9J4 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
USP42Q9H9J4 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
USP42Q9H9J4 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
USP42Q9H9J4 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
USP42Q9H9J4 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC25.25■■□□□ 1.63
USP42Q9H9J4 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC25.25■■□□□ 1.63
USP42Q9H9J4 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
USP42Q9H9J4 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
USP42Q9H9J4 LTBR-211ENST00000543190 785 ntTSL 3 BASIC25.25■■□□□ 1.63
USP42Q9H9J4 C1QL1P1-201ENST00000568105 661 ntBASIC25.25■■□□□ 1.63
USP42Q9H9J4 AC026271.3-201ENST00000571884 352 ntBASIC25.25■■□□□ 1.63
USP42Q9H9J4 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC25.25■■□□□ 1.63
USP42Q9H9J4 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
USP42Q9H9J4 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
USP42Q9H9J4 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
USP42Q9H9J4 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC25.24■■□□□ 1.63
USP42Q9H9J4 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC25.24■■□□□ 1.63
USP42Q9H9J4 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC25.24■■□□□ 1.63
USP42Q9H9J4 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC25.24■■□□□ 1.63
USP42Q9H9J4 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
USP42Q9H9J4 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
USP42Q9H9J4 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms