Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM4Q9C037 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TRIM4Q9C037 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.69■□□□□ 0.74
TRIM4Q9C037 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
TRIM4Q9C037 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM4Q9C037 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM4Q9C037 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM4Q9C037 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM4Q9C037 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM4Q9C037 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
TRIM4Q9C037 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM4Q9C037 AC004408.2-201ENST00000623613 2777 ntBASIC19.68■□□□□ 0.74
TRIM4Q9C037 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
TRIM4Q9C037 KRT87P-202ENST00000534226 1464 ntBASIC19.68■□□□□ 0.74
TRIM4Q9C037 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM4Q9C037 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM4Q9C037 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM4Q9C037 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM4Q9C037 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
TRIM4Q9C037 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM4Q9C037 MIPEPP3-201ENST00000412105 444 ntBASIC19.68■□□□□ 0.74
TRIM4Q9C037 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM4Q9C037 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.68■□□□□ 0.74
TRIM4Q9C037 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.68■□□□□ 0.74
TRIM4Q9C037 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM4Q9C037 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
TRIM4Q9C037 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM4Q9C037 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM4Q9C037 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM4Q9C037 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM4Q9C037 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM4Q9C037 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.68■□□□□ 0.74
TRIM4Q9C037 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM4Q9C037 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM4Q9C037 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM4Q9C037 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
TRIM4Q9C037 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM4Q9C037 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM4Q9C037 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM4Q9C037 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM4Q9C037 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.67■□□□□ 0.74
TRIM4Q9C037 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM4Q9C037 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
TRIM4Q9C037 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM4Q9C037 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.67■□□□□ 0.74
TRIM4Q9C037 AC010331.1-201ENST00000611423 582 ntBASIC19.67■□□□□ 0.74
TRIM4Q9C037 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM4Q9C037 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM4Q9C037 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM4Q9C037 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM4Q9C037 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
TRIM4Q9C037 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM4Q9C037 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.67■□□□□ 0.74
TRIM4Q9C037 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.66■□□□□ 0.74
TRIM4Q9C037 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM4Q9C037 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM4Q9C037 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM4Q9C037 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM4Q9C037 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM4Q9C037 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.66■□□□□ 0.74
TRIM4Q9C037 LTB4R2-202ENST00000528054 3092 ntBASIC19.66■□□□□ 0.74
TRIM4Q9C037 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM4Q9C037 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.66■□□□□ 0.74
TRIM4Q9C037 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.66■□□□□ 0.74
TRIM4Q9C037 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.66■□□□□ 0.74
TRIM4Q9C037 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.66■□□□□ 0.74
TRIM4Q9C037 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.66■□□□□ 0.74
TRIM4Q9C037 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
TRIM4Q9C037 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.66■□□□□ 0.74
TRIM4Q9C037 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM4Q9C037 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
TRIM4Q9C037 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
TRIM4Q9C037 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
TRIM4Q9C037 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM4Q9C037 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM4Q9C037 TNXA-203ENST00000507684 2038 ntBASIC19.66■□□□□ 0.74
TRIM4Q9C037 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM4Q9C037 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM4Q9C037 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM4Q9C037 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.66■□□□□ 0.74
TRIM4Q9C037 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.66■□□□□ 0.74
TRIM4Q9C037 MKRN4P-201ENST00000444706 1521 ntBASIC19.66■□□□□ 0.74
TRIM4Q9C037 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM4Q9C037 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
TRIM4Q9C037 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
TRIM4Q9C037 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM4Q9C037 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
TRIM4Q9C037 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM4Q9C037 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC19.65■□□□□ 0.74
TRIM4Q9C037 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
TRIM4Q9C037 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.65■□□□□ 0.74
TRIM4Q9C037 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.65■□□□□ 0.74
TRIM4Q9C037 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM4Q9C037 AC053503.5-201ENST00000601508 636 ntBASIC19.65■□□□□ 0.74
TRIM4Q9C037 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM4Q9C037 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM4Q9C037 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM4Q9C037 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM4Q9C037 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM4Q9C037 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms