Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 C1QL1P1-201ENST00000568105 661 ntBASIC20.27■□□□□ 0.84
CHFRQ96EP1 AC005363.2-201ENST00000618631 242 ntBASIC20.27■□□□□ 0.84
CHFRQ96EP1 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.27■□□□□ 0.83
CHFRQ96EP1 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CHFRQ96EP1 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CHFRQ96EP1 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CHFRQ96EP1 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CHFRQ96EP1 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
CHFRQ96EP1 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.26■□□□□ 0.83
CHFRQ96EP1 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHFRQ96EP1 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHFRQ96EP1 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHFRQ96EP1 LINC01568-207ENST00000641790 1380 ntBASIC20.26■□□□□ 0.83
CHFRQ96EP1 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.26■□□□□ 0.83
CHFRQ96EP1 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHFRQ96EP1 AC113347.1-201ENST00000413321 391 ntBASIC20.26■□□□□ 0.83
CHFRQ96EP1 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHFRQ96EP1 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHFRQ96EP1 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.26■□□□□ 0.83
CHFRQ96EP1 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.26■□□□□ 0.83
CHFRQ96EP1 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHFRQ96EP1 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHFRQ96EP1 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHFRQ96EP1 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHFRQ96EP1 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHFRQ96EP1 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CHFRQ96EP1 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHFRQ96EP1 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.25■□□□□ 0.83
CHFRQ96EP1 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.25■□□□□ 0.83
CHFRQ96EP1 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHFRQ96EP1 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHFRQ96EP1 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.25■□□□□ 0.83
CHFRQ96EP1 KRT18P57-201ENST00000443599 1254 ntBASIC20.25■□□□□ 0.83
CHFRQ96EP1 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.25■□□□□ 0.83
CHFRQ96EP1 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CHFRQ96EP1 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHFRQ96EP1 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CHFRQ96EP1 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CHFRQ96EP1 AC116351.2-201ENST00000606540 1585 ntBASIC20.25■□□□□ 0.83
CHFRQ96EP1 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHFRQ96EP1 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.24■□□□□ 0.83
CHFRQ96EP1 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CHFRQ96EP1 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.24■□□□□ 0.83
CHFRQ96EP1 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHFRQ96EP1 TERF1P1-201ENST00000311003 1181 ntBASIC20.24■□□□□ 0.83
CHFRQ96EP1 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHFRQ96EP1 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.24■□□□□ 0.83
CHFRQ96EP1 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.24■□□□□ 0.83
CHFRQ96EP1 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.24■□□□□ 0.83
CHFRQ96EP1 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.24■□□□□ 0.83
CHFRQ96EP1 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHFRQ96EP1 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.24■□□□□ 0.83
CHFRQ96EP1 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHFRQ96EP1 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHFRQ96EP1 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHFRQ96EP1 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.24■□□□□ 0.83
CHFRQ96EP1 TFP1-202ENST00000475455 1573 ntBASIC20.24■□□□□ 0.83
CHFRQ96EP1 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHFRQ96EP1 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.24■□□□□ 0.83
CHFRQ96EP1 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.23■□□□□ 0.83
CHFRQ96EP1 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CHFRQ96EP1 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.23■□□□□ 0.83
CHFRQ96EP1 AP006587.1-201ENST00000534129 1502 ntBASIC20.23■□□□□ 0.83
CHFRQ96EP1 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CHFRQ96EP1 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CHFRQ96EP1 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CHFRQ96EP1 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
CHFRQ96EP1 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CHFRQ96EP1 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.23■□□□□ 0.83
CHFRQ96EP1 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.23■□□□□ 0.83
CHFRQ96EP1 NAPSB-206ENST00000562112 1266 ntBASIC20.23■□□□□ 0.83
CHFRQ96EP1 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CHFRQ96EP1 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CHFRQ96EP1 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHFRQ96EP1 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHFRQ96EP1 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CHFRQ96EP1 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHFRQ96EP1 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.23■□□□□ 0.83
CHFRQ96EP1 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHFRQ96EP1 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHFRQ96EP1 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.22■□□□□ 0.83
CHFRQ96EP1 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CHFRQ96EP1 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHFRQ96EP1 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHFRQ96EP1 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHFRQ96EP1 AC026310.3-201ENST00000625186 2373 ntBASIC20.22■□□□□ 0.83
CHFRQ96EP1 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHFRQ96EP1 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CHFRQ96EP1 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.22■□□□□ 0.83
CHFRQ96EP1 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.22■□□□□ 0.83
CHFRQ96EP1 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHFRQ96EP1 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.22■□□□□ 0.83
CHFRQ96EP1 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.22■□□□□ 0.83
CHFRQ96EP1 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.22■□□□□ 0.83
CHFRQ96EP1 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHFRQ96EP1 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.22■□□□□ 0.83
CHFRQ96EP1 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.22■□□□□ 0.83
CHFRQ96EP1 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.22■□□□□ 0.83
CHFRQ96EP1 AL445675.2-201ENST00000620291 557 ntBASIC20.22■□□□□ 0.83
CHFRQ96EP1 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms