Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.33■□□□□ 0.85
SKA1Q96BD8 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SKA1Q96BD8 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
SKA1Q96BD8 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.33■□□□□ 0.85
SKA1Q96BD8 RPPH1-201ENST00000516869 333 ntBASIC20.33■□□□□ 0.85
SKA1Q96BD8 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SKA1Q96BD8 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.33■□□□□ 0.85
SKA1Q96BD8 SOX15-203ENST00000570788 1093 ntBASIC20.33■□□□□ 0.85
SKA1Q96BD8 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SKA1Q96BD8 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
SKA1Q96BD8 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
SKA1Q96BD8 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SKA1Q96BD8 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.33■□□□□ 0.84
SKA1Q96BD8 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SKA1Q96BD8 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SKA1Q96BD8 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.32■□□□□ 0.84
SKA1Q96BD8 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SKA1Q96BD8 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
SKA1Q96BD8 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SKA1Q96BD8 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.32■□□□□ 0.84
SKA1Q96BD8 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.32■□□□□ 0.84
SKA1Q96BD8 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SKA1Q96BD8 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SKA1Q96BD8 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
SKA1Q96BD8 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SKA1Q96BD8 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.32■□□□□ 0.84
SKA1Q96BD8 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SKA1Q96BD8 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SKA1Q96BD8 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.32■□□□□ 0.84
SKA1Q96BD8 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.32■□□□□ 0.84
SKA1Q96BD8 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.32■□□□□ 0.84
SKA1Q96BD8 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SKA1Q96BD8 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SKA1Q96BD8 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SKA1Q96BD8 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SKA1Q96BD8 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SKA1Q96BD8 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.31■□□□□ 0.84
SKA1Q96BD8 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SKA1Q96BD8 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.31■□□□□ 0.84
SKA1Q96BD8 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SKA1Q96BD8 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SKA1Q96BD8 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SKA1Q96BD8 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.31■□□□□ 0.84
SKA1Q96BD8 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.31■□□□□ 0.84
SKA1Q96BD8 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.31■□□□□ 0.84
SKA1Q96BD8 AL596275.1-201ENST00000423464 877 ntBASIC20.31■□□□□ 0.84
SKA1Q96BD8 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SKA1Q96BD8 RN7SL471P-201ENST00000580476 299 ntBASIC20.31■□□□□ 0.84
SKA1Q96BD8 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
SKA1Q96BD8 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SKA1Q96BD8 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SKA1Q96BD8 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.3■□□□□ 0.84
SKA1Q96BD8 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SKA1Q96BD8 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SKA1Q96BD8 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.3■□□□□ 0.84
SKA1Q96BD8 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SKA1Q96BD8 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SKA1Q96BD8 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SKA1Q96BD8 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SKA1Q96BD8 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SKA1Q96BD8 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SKA1Q96BD8 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SKA1Q96BD8 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
SKA1Q96BD8 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SKA1Q96BD8 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SKA1Q96BD8 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
SKA1Q96BD8 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SKA1Q96BD8 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SKA1Q96BD8 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SKA1Q96BD8 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
SKA1Q96BD8 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SKA1Q96BD8 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.3■□□□□ 0.84
SKA1Q96BD8 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.29■□□□□ 0.84
SKA1Q96BD8 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SKA1Q96BD8 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SKA1Q96BD8 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
SKA1Q96BD8 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
SKA1Q96BD8 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.29■□□□□ 0.84
SKA1Q96BD8 C2orf69P4-201ENST00000565394 541 ntBASIC20.29■□□□□ 0.84
SKA1Q96BD8 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.29■□□□□ 0.84
SKA1Q96BD8 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SKA1Q96BD8 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.29■□□□□ 0.84
SKA1Q96BD8 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
SKA1Q96BD8 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SKA1Q96BD8 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SKA1Q96BD8 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SKA1Q96BD8 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SKA1Q96BD8 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
SKA1Q96BD8 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SKA1Q96BD8 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SKA1Q96BD8 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SKA1Q96BD8 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SKA1Q96BD8 AC018445.3-201ENST00000624177 1945 ntBASIC20.28■□□□□ 0.84
SKA1Q96BD8 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SKA1Q96BD8 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SKA1Q96BD8 POM121L13P-201ENST00000422362 380 ntBASIC20.28■□□□□ 0.84
SKA1Q96BD8 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.28■□□□□ 0.84
SKA1Q96BD8 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SKA1Q96BD8 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.28■□□□□ 0.84
SKA1Q96BD8 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms