Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
HDDC3Q8N4P3 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDDC3Q8N4P3 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDDC3Q8N4P3 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.96■□□□□ 0.79
HDDC3Q8N4P3 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.96■□□□□ 0.79
HDDC3Q8N4P3 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.96■□□□□ 0.79
HDDC3Q8N4P3 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.96■□□□□ 0.79
HDDC3Q8N4P3 AF186192.3-201ENST00000583427 947 ntBASIC19.96■□□□□ 0.79
HDDC3Q8N4P3 AL590326.2-201ENST00000625139 305 ntBASIC19.96■□□□□ 0.79
HDDC3Q8N4P3 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.96■□□□□ 0.79
HDDC3Q8N4P3 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDDC3Q8N4P3 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDDC3Q8N4P3 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
HDDC3Q8N4P3 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.96■□□□□ 0.79
HDDC3Q8N4P3 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.96■□□□□ 0.79
HDDC3Q8N4P3 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.79
HDDC3Q8N4P3 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDDC3Q8N4P3 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.95■□□□□ 0.78
HDDC3Q8N4P3 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDDC3Q8N4P3 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.95■□□□□ 0.78
HDDC3Q8N4P3 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDDC3Q8N4P3 AL049597.2-201ENST00000565575 961 ntBASIC19.95■□□□□ 0.78
HDDC3Q8N4P3 RPS15-203ENST00000586096 570 ntTSL 2 BASIC19.95■□□□□ 0.78
HDDC3Q8N4P3 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.95■□□□□ 0.78
HDDC3Q8N4P3 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDDC3Q8N4P3 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.95■□□□□ 0.78
HDDC3Q8N4P3 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.95■□□□□ 0.78
HDDC3Q8N4P3 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
HDDC3Q8N4P3 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HDDC3Q8N4P3 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDDC3Q8N4P3 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDDC3Q8N4P3 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
HDDC3Q8N4P3 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDDC3Q8N4P3 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.94■□□□□ 0.78
HDDC3Q8N4P3 AL353807.1-201ENST00000427475 662 ntBASIC19.94■□□□□ 0.78
HDDC3Q8N4P3 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HDDC3Q8N4P3 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HDDC3Q8N4P3 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.94■□□□□ 0.78
HDDC3Q8N4P3 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.94■□□□□ 0.78
HDDC3Q8N4P3 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.94■□□□□ 0.78
HDDC3Q8N4P3 AL353708.3-201ENST00000610272 989 ntBASIC19.94■□□□□ 0.78
HDDC3Q8N4P3 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDDC3Q8N4P3 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.94■□□□□ 0.78
HDDC3Q8N4P3 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
HDDC3Q8N4P3 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDDC3Q8N4P3 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
HDDC3Q8N4P3 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDDC3Q8N4P3 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HDDC3Q8N4P3 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDDC3Q8N4P3 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.93■□□□□ 0.78
HDDC3Q8N4P3 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.93■□□□□ 0.78
HDDC3Q8N4P3 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDDC3Q8N4P3 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.93■□□□□ 0.78
HDDC3Q8N4P3 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HDDC3Q8N4P3 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.93■□□□□ 0.78
HDDC3Q8N4P3 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.93■□□□□ 0.78
HDDC3Q8N4P3 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.93■□□□□ 0.78
HDDC3Q8N4P3 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDDC3Q8N4P3 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDDC3Q8N4P3 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
HDDC3Q8N4P3 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.93■□□□□ 0.78
HDDC3Q8N4P3 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HDDC3Q8N4P3 KRT16P6-202ENST00000425692 1426 ntBASIC19.93■□□□□ 0.78
HDDC3Q8N4P3 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDDC3Q8N4P3 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDDC3Q8N4P3 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.92■□□□□ 0.78
HDDC3Q8N4P3 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDDC3Q8N4P3 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDDC3Q8N4P3 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.92■□□□□ 0.78
HDDC3Q8N4P3 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
HDDC3Q8N4P3 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDDC3Q8N4P3 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.92■□□□□ 0.78
HDDC3Q8N4P3 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.92■□□□□ 0.78
HDDC3Q8N4P3 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDDC3Q8N4P3 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.92■□□□□ 0.78
HDDC3Q8N4P3 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HDDC3Q8N4P3 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDDC3Q8N4P3 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDDC3Q8N4P3 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDDC3Q8N4P3 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 FAM197Y1-201ENST00000421178 764 ntBASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms